RNA id: TU2627891


Basic Information

Item Value
RNA id TU2627891
length 223
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G2297165
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12530490 ~ 12569590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcatgctcctgatgaggtgacggatggtctcctgagggatctcctcccagacctggactaaagcatccgccaactcttggacagtctgtggtgcaacgtggCGGATGgaacgagacatgatgtcccagatgtgctcaattggattcaggtctggggaacgggcgggccagtccatagcatcaatgccttcctcttgcaggaactgctgacacactccagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627871 lncRNA upstream 31912 12496020 ~ 12498578 (+) True G2297146
TU2627858 lncRNA upstream 47596 12478984 ~ 12482894 (+) True G2297133
TU2627851 lncRNA upstream 65402 12464038 ~ 12465088 (+) True G2297127
TU2627819 lncRNA upstream 112281 12417942 ~ 12418209 (+) True G2297096
TU2627822 lncRNA upstream 154750 12375175 ~ 12375740 (+) True G2297098
TU2628148 lncRNA downstream 27239 12596829 ~ 12597065 (+) True G2297393
TU2628185 lncRNA downstream 51900 12621490 ~ 12621704 (+) True G2297430
TU2628232 lncRNA downstream 97786 12667376 ~ 12667953 (+) True G2297472
TU2628234 lncRNA downstream 100779 12670369 ~ 12671333 (+) True G2297474
TU2628239 lncRNA downstream 107087 12676677 ~ 12676883 (+) True G2297479
XM_036971819.1 mRNA upstream 58242 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 58242 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 58242 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 116341 12322871 ~ 12414149 (+) False col8a2
XM_036970609.1 mRNA downstream 704630 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 937998 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 1281385 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 1281385 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 1281385 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 612350 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 621824 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 965900 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1240187 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 2009183 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1060472 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1183677 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1444642 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1637576 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1649311 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile