RNA id: TU2627919


Basic Information

Item Value
RNA id TU2627919
length 222
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G2297185
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12564158 ~ 12580049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccaagtcaaagtccagacctgggacggaggtttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627903 lncRNA upstream 7642 12552690 ~ 12556516 (+) False G2297177
TU2627904 lncRNA upstream 7642 12552690 ~ 12556516 (+) False G2297177
TU2627907 lncRNA upstream 7642 12556000 ~ 12556516 (+) True G2297177
TU2627871 lncRNA upstream 65580 12496020 ~ 12498578 (+) True G2297146
TU2627858 lncRNA upstream 81264 12478984 ~ 12482894 (+) True G2297133
TU2628148 lncRNA downstream 16780 12596829 ~ 12597065 (+) True G2297393
TU2628185 lncRNA downstream 41441 12621490 ~ 12621704 (+) True G2297430
TU2628232 lncRNA downstream 87327 12667376 ~ 12667953 (+) True G2297472
TU2628234 lncRNA downstream 90320 12670369 ~ 12671333 (+) True G2297474
TU2628239 lncRNA downstream 96628 12676677 ~ 12676883 (+) True G2297479
XM_036971819.1 mRNA upstream 91910 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 91910 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 91910 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 150009 12322871 ~ 12414149 (+) False col8a2
XM_036970609.1 mRNA downstream 694171 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 927539 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 1270926 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 1270926 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 1270926 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 646018 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 655492 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 999568 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1273855 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 2042851 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1050013 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1173218 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1434183 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1627117 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1638852 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile