RNA id: TU2628148


Basic Information

Item Value
RNA id TU2628148
length 237
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2297393
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12596829 ~ 12597065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaacatcacccagataagccagtcatgtgagaaactcatcatcatgcaagcggtcagacaagtgaaaattgtggtcagtaaagaaaacttgtCTCTCAATAAAAACAGCtggtcaatactttgccccttgataaccagtgcacttctgtatgttgtaaaagcgttacatggtcgctgcccatatcattgcataatgcagaaaatacacgagagttcaggggccttgctgtaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2627919 lncRNA upstream 16780 12564158 ~ 12580049 (+) True G2297185
TU2627891 lncRNA upstream 27239 12530490 ~ 12569590 (+) True G2297165
TU2627903 lncRNA upstream 40313 12552690 ~ 12556516 (+) False G2297177
TU2627904 lncRNA upstream 40313 12552690 ~ 12556516 (+) False G2297177
TU2627907 lncRNA upstream 40313 12556000 ~ 12556516 (+) True G2297177
TU2628185 lncRNA downstream 24425 12621490 ~ 12621704 (+) True G2297430
TU2628232 lncRNA downstream 70311 12667376 ~ 12667953 (+) True G2297472
TU2628234 lncRNA downstream 73304 12670369 ~ 12671333 (+) True G2297474
TU2628239 lncRNA downstream 79612 12676677 ~ 12676883 (+) True G2297479
TU2628329 lncRNA downstream 166087 12763152 ~ 12763366 (+) True G2297568
XM_036971819.1 mRNA upstream 124581 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 124581 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 124581 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 182680 12322871 ~ 12414149 (+) False col8a2
XM_036970609.1 mRNA downstream 677155 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 910523 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 1253910 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 1253910 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 1253910 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 678689 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 688163 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 1032239 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1306526 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 2075522 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 1032997 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1156202 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1417167 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1610101 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1621836 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile