RNA id: TU2628234


Basic Information

Item Value
RNA id TU2628234
length 965
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2297474
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12670369 ~ 12671333 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtttcaaagtattcatatcgtagctctgggttgttttgctgcttatgttttttgtttgacatttgtcttaggtgttttctaattgttttacattcattatcaaaccatttgtcagtaacattttgatttttgcttctgatgttgcattgctttggttttctcaaatttgctttcgatgctgctttttggaatatgcagttgatgttttgggtagctgaattgacaccatctttattgttttggtacagtgagttattgaaaaactgtatagagttcatcatttcatttgagttcaatgtttcaatgaatgcctctgcactgtttggagcccatctgaacaattggtttatgttgtaaagtttattgggctgtttttttgaatgaatattgccggttaatttcttcagaaacacgttgatctgactgtgatctgacaatggtgtctgtggtctgacagtgaatgcactaatggaggaggggtcaatgtcagtgatggcataatcgactacacttgtcccaagagctgagcagtaagtaaactgacctaaagagtcccctctgattctaccattaagcatgtacaggcctaaggctcgacagagatgtactaactcttttccatttttgttcagtatttggtcaggactgtttctattatttataatagggctactgtacaaggaggggtgtccaaatatgtggtggttacctcccgcatcagtgtagtcaggctcagaacctgttcttgcattgaaatctccacaaagaagcactttaccctgcgcctgaaatgtaatgatttctgtctggagattgtcaaaaaactgatcatcataatatgatgaatctgaaggaggagcataagctgcacatatgtatacatcattgtcacaatagattgtacctttgttaagttttagccaaatgtgagtggtaccttttttcatttcattcagtgctaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2628232 lncRNA upstream 2416 12667376 ~ 12667953 (+) True G2297472
TU2628185 lncRNA upstream 48665 12621490 ~ 12621704 (+) True G2297430
TU2628148 lncRNA upstream 73304 12596829 ~ 12597065 (+) True G2297393
TU2627919 lncRNA upstream 90320 12564158 ~ 12580049 (+) True G2297185
TU2627904 lncRNA upstream 113853 12552690 ~ 12556516 (+) False G2297177
TU2628239 lncRNA downstream 5344 12676677 ~ 12676883 (+) True G2297479
TU2628329 lncRNA downstream 91819 12763152 ~ 12763366 (+) True G2297568
TU2628355 lncRNA downstream 109718 12781051 ~ 12781254 (+) True G2297594
TU2628369 lncRNA downstream 121677 12793010 ~ 12793250 (+) True G2297608
TU2628384 lncRNA downstream 132154 12803487 ~ 12803761 (+) True G2297623
XM_036971819.1 mRNA upstream 198121 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 198121 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 198121 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 256220 12322871 ~ 12414149 (+) False col8a2
XM_036970609.1 mRNA downstream 602887 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 836255 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 1179642 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 1179642 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 1179642 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 752229 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 761703 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 1105779 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1380066 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 2149062 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 958729 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 1081934 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1342899 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1535833 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1547568 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile