RNA id: TU2628500


Basic Information

Item Value
RNA id TU2628500
length 255
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2297733
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12879228 ~ 12879524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttaggtcctgagctacaggcagttagatttggatatgtcattttaggtcctgagctacaggcagttagatttgggtatgtcattttaggtcctgagctacaggcagttagatttgggtatgtcattttaggtcctgagctacaggcagttagatttgggtatgtcattttaggcgaaattgAAAGAAAGGTGCGGATCCtgaagaggcattagaagaaccAACACgatccatcaaatgcatttggtATATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2628477 lncRNA upstream 11783 12867155 ~ 12867445 (+) True G2297710
TU2628397 lncRNA upstream 65503 12813495 ~ 12813725 (+) True G2297636
TU2628388 lncRNA upstream 74154 12804849 ~ 12805074 (+) True G2297627
TU2628384 lncRNA upstream 75467 12803487 ~ 12803761 (+) True G2297623
TU2628369 lncRNA upstream 85978 12793010 ~ 12793250 (+) True G2297608
TU2628522 lncRNA downstream 20184 12899708 ~ 12899947 (+) True G2297755
TU2628536 lncRNA downstream 36613 12916137 ~ 12916352 (+) True G2297769
TU2628547 lncRNA downstream 45335 12924859 ~ 12925064 (+) True G2297780
TU2628557 lncRNA downstream 52787 12932311 ~ 12932530 (+) True G2297790
TU2628560 lncRNA downstream 54491 12934015 ~ 12934288 (+) True G2297793
XM_036971819.1 mRNA upstream 406980 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 406980 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 406980 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 465079 12322871 ~ 12414149 (+) False col8a2
XM_036970609.1 mRNA downstream 394696 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 628064 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 971451 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 971451 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 971451 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 961088 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 970562 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 1314638 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1588925 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 2357921 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 750538 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 873743 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 1134708 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1327642 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1339377 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile