RNA id: TU2628780


Basic Information

Item Value
RNA id TU2628780
length 214
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2298012
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13101992 ~ 13102205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATAGACTCAGCATAGACTCAATCAGTACATAAAGGGTTTTAGAATGCATGAAGGCATCCCTCGTTTAAGGAGAGAAGTACACGCATAAATTGTTAATTAAGAAGGGAACGTAGTGTGAGATGATGGAGGAGACAGTCTATTCTATCATGGTAAGGCAGGTTAGTCATTCATTTATAGAGCCATCTAATTCTGAACTGTTTAACAGACATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2628734 lncRNA upstream 35173 13066430 ~ 13066819 (+) True G2297967
TU2628671 lncRNA upstream 80745 13020927 ~ 13021247 (+) True G2297904
TU2628646 lncRNA upstream 98106 13003054 ~ 13003886 (+) True G2297879
TU2628645 lncRNA upstream 101225 13000530 ~ 13000767 (+) True G2297878
TU2628618 lncRNA upstream 120588 12981195 ~ 12981404 (+) True G2297851
TU2628818 lncRNA downstream 35856 13138061 ~ 13138286 (+) True G2298049
TU2628838 lncRNA downstream 54855 13157060 ~ 13157488 (+) True G2298069
TU2628886 lncRNA downstream 100195 13202400 ~ 13202642 (+) True G2298117
TU2628890 lncRNA downstream 104813 13207018 ~ 13207232 (+) True G2298121
TU2628894 lncRNA downstream 108069 13210274 ~ 13210559 (+) True G2298125
XM_036971819.1 mRNA upstream 629744 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 629744 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 629744 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 687843 12322871 ~ 12414149 (+) False col8a2
XM_036970609.1 mRNA downstream 172015 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 405383 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 748770 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 748770 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 748770 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 1183852 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1193326 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 1537402 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1811689 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 2580685 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 527857 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 651062 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 912027 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 1104961 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1116696 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile