RNA id: TU2628898


Basic Information

Item Value
RNA id TU2628898
length 287
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G2298129
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13214294 ~ 13214580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggggatgccgtctgggtctgcagccttgcgagggttaacacgtttaaatgttttactcacgtcggctgcagtgatggagtgtccgcatgttttggttgcgggccgtgtcagtggcactgtattgtcctcaaagctggcaaaaaagttatttagtctgcctgggagcaagacatcctggtccgttaCGGGGGTAGTTTTCTTTTTgcaatctgtgattgactgtagaccctgccacatacctcttgtgtctgagccgttgaattgcgactctactttgtctctatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2628895 lncRNA upstream 1935 13212136 ~ 13212359 (+) True G2298126
TU2628894 lncRNA upstream 3735 13210274 ~ 13210559 (+) True G2298125
TU2628890 lncRNA upstream 7062 13207018 ~ 13207232 (+) True G2298121
TU2628886 lncRNA upstream 11652 13202400 ~ 13202642 (+) True G2298117
TU2628838 lncRNA upstream 56806 13157060 ~ 13157488 (+) True G2298069
TU2628990 lncRNA downstream 106961 13321541 ~ 13321947 (+) True G2298211
TU2629057 lncRNA downstream 207465 13422045 ~ 13423420 (+) True G2298275
TU2629095 lncRNA downstream 269084 13483664 ~ 13484596 (+) True G2298312
TU2629101 lncRNA downstream 270451 13485031 ~ 13485463 (+) False G2298313
TU2629102 lncRNA downstream 270451 13485031 ~ 13485463 (+) False G2298313
XM_036971819.1 mRNA upstream 742046 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 742046 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 742046 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 800145 12322871 ~ 12414149 (+) False col8a2
XM_036970609.1 mRNA downstream 59640 13274220 ~ 13491588 (+) True LOC118946451
XM_036970608.1 mRNA downstream 293008 13507588 ~ 13724989 (+) False LOC110487938
XM_036971044.1 mRNA downstream 636395 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 636395 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 636395 13850975 ~ 14001721 (+) False LOC110487940
TU2626989 other upstream 1296154 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1305628 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 1649704 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 1923991 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 2692987 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 415482 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 538687 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 799652 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 992586 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 1004321 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile