RNA id: TU2629153


Basic Information

Item Value
RNA id TU2629153
length 231
lncRNA type intronic
GC content 0.33
exon number 1
gene id G2298360
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13578261 ~ 13578491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctagcttggtcatgtctccctctctctctctctctggctgggtcatctctctcaattcaattcaattcaagggctttattggcatgggaaacatgtgttaacattgccaaagcaagtgaggtagataatatataaagtgaaataaacaataaaaatgaacagtaaacattacacatacagaagtttcaaaacaataaagacattacaaatgtcatattatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629101 lncRNA upstream 92798 13485031 ~ 13485463 (+) False G2298313
TU2629102 lncRNA upstream 92798 13485031 ~ 13485463 (+) False G2298313
TU2629103 lncRNA upstream 92798 13485031 ~ 13485463 (+) True G2298313
TU2629095 lncRNA upstream 93665 13483664 ~ 13484596 (+) True G2298312
TU2629057 lncRNA upstream 154841 13422045 ~ 13423420 (+) True G2298275
TU2629160 lncRNA downstream 8361 13586852 ~ 13587059 (+) True G2298367
TU2629163 lncRNA downstream 14065 13592556 ~ 13592797 (+) True G2298370
TU2629165 lncRNA downstream 15864 13594355 ~ 13594604 (+) True G2298372
TU2629174 lncRNA downstream 30833 13609324 ~ 13609617 (+) True G2298381
TU2629177 lncRNA downstream 38497 13616988 ~ 13617193 (+) True G2298384
XM_036970609.1 mRNA upstream 86673 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1106013 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1106013 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1106013 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 1164112 12322871 ~ 12414149 (+) False col8a2
XM_036971044.1 mRNA downstream 272484 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 272484 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 272484 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 566510 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 599828 14178319 ~ 14187277 (+) False LOC110487945
TU2626989 other upstream 1660121 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1669595 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2013671 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2287958 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 3056954 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 51571 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 174776 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 435741 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 628675 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 640410 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile