RNA id: TU2629163



Basic Information


Item Value
RNA id TU2629163
length 242
lncRNA type intronic
GC content 0.39
exon number 1
gene id G2298370
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13592556 ~ 13592797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTCATTAGTACAGTTAGAGTCACTTTCTAACAGCTCTTTGAAGACTTGTATCACTGTTATAAATAGTAAAACTGGTACAAGACATTTGTAGTAGAGCGTGGTTGGCATGTCAATGTCTGTAAGGCTGGTCATTAGTTCAATTAGAGACTCTGAATGTTCCCATTGATCGACCTTAACATCACACTTTTCATTCGAGAATTTTAAACACATCACCCGCAGAGAGCAAGGCAAACCACTATCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2629160 lncRNA upstream 5497 13586852 ~ 13587059 (+) True G2298367
TU2629153 lncRNA upstream 14065 13578261 ~ 13578491 (+) True G2298360
TU2629101 lncRNA upstream 107093 13485031 ~ 13485463 (+) False G2298313
TU2629102 lncRNA upstream 107093 13485031 ~ 13485463 (+) False G2298313
TU2629103 lncRNA upstream 107093 13485031 ~ 13485463 (+) True G2298313
TU2629165 lncRNA downstream 1558 13594355 ~ 13594604 (+) True G2298372
TU2629174 lncRNA downstream 16527 13609324 ~ 13609617 (+) True G2298381
TU2629177 lncRNA downstream 24191 13616988 ~ 13617193 (+) True G2298384
TU2629178 lncRNA downstream 26487 13619284 ~ 13619497 (+) True G2298385
TU2629180 lncRNA downstream 29420 13622217 ~ 13622469 (+) True G2298387
XM_036970609.1 mRNA upstream 100968 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1120308 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1120308 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1120308 12453662 ~ 12472248 (+) True LOC110487937
XR_005041309.1 mRNA upstream 1178407 12322871 ~ 12414149 (+) True col8a2
XM_036971044.1 mRNA downstream 258178 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 258178 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 258178 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 552204 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 585522 14178319 ~ 14187277 (+) False LOC110487945
TU2626989 other upstream 1674416 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1683890 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2027966 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2302253 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 3071249 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 37265 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 160470 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 421435 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 614369 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 626104 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile