RNA id: TU2629165


Basic Information

Item Value
RNA id TU2629165
length 250
lncRNA type intronic
GC content 0.34
exon number 1
gene id G2298372
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13594355 ~ 13594604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgtgtccaagaacgatgtatcaatgaagagatatgtgaaaaacaccttgatgattgattctaaacaacatttgccatgttttcagtcgatattatggagttaatttggaaaaaagtttgcgttttgaggactgaatttatggattttttttggtagccaaatgtgatgtataaaacggagctatttctaatacacaaggaatctttttggaaaaactgagcatctgctatctaactgagagtatcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629163 lncRNA upstream 1558 13592556 ~ 13592797 (+) True G2298370
TU2629160 lncRNA upstream 7296 13586852 ~ 13587059 (+) True G2298367
TU2629153 lncRNA upstream 15864 13578261 ~ 13578491 (+) True G2298360
TU2629101 lncRNA upstream 108892 13485031 ~ 13485463 (+) False G2298313
TU2629174 lncRNA downstream 14720 13609324 ~ 13609617 (+) True G2298381
TU2629177 lncRNA downstream 22384 13616988 ~ 13617193 (+) True G2298384
TU2629178 lncRNA downstream 24680 13619284 ~ 13619497 (+) True G2298385
TU2629180 lncRNA downstream 27613 13622217 ~ 13622469 (+) True G2298387
TU2629186 lncRNA downstream 33742 13628346 ~ 13629099 (+) True G2298392
XM_036970609.1 mRNA upstream 102767 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1122107 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1122107 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1122107 12453662 ~ 12472248 (+) True LOC110487937
XR_005041309.1 mRNA upstream 1180206 12322871 ~ 12414149 (+) True col8a2
XM_036971044.1 mRNA downstream 256371 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 256371 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 256371 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 550397 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 583715 14178319 ~ 14187277 (+) False LOC110487945
TU2626989 other upstream 1676215 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1685689 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2029765 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2304052 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 3073048 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 35458 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 158663 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 419628 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 612562 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 624297 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile