Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058971 |
| length | 1749 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 10 |
| gene id | XLOC_030157 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 29831195 ~ 29848772 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:1902036 | regulation of hematopoietic stem cell differentiation | biological_process |
| GO:0050892 | intestinal absorption | biological_process |
| GO:0090557 | establishment of endothelial intestinal barrier | biological_process |
| GO:0090559 | regulation of membrane permeability | biological_process |
| GO:0048534 | hematopoietic or lymphoid organ development | biological_process |
| GO:0048916 | posterior lateral line development | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-2416 | Enables protein heterodimerization activity. Acts upstream of or within hematopoietic or lymphoid organ development; posterior lateral line development; and regulation of hematopoietic stem cell differentiation. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction. Is expressed in several structures, including EVL; digestive system; integument; pronephros; and sensory system. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human F11R (F11 receptor). |
| ensembl_id | ENSDART00000109660 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058959 | lncRNA | upstream | 38611 | 29784172 ~ 29792624 (+) | True | XLOC_030153 |
| TCONS_00061714 | lncRNA | upstream | 265410 | 29560655 ~ 29565825 (+) | False | XLOC_030150 |
| TCONS_00061715 | lncRNA | upstream | 265410 | 29562648 ~ 29565825 (+) | True | XLOC_030150 |
| TCONS_00061713 | lncRNA | upstream | 268738 | 29560059 ~ 29562497 (+) | False | XLOC_030150 |
| TCONS_00061712 | lncRNA | upstream | 588075 | 29241794 ~ 29243160 (+) | True | XLOC_030149 |
| TCONS_00061717 | lncRNA | downstream | 53381 | 29902153 ~ 29952916 (+) | False | XLOC_030159 |
| TCONS_00061716 | lncRNA | downstream | 53381 | 29902153 ~ 29952916 (+) | False | XLOC_030159 |
| TCONS_00061719 | lncRNA | downstream | 53381 | 29902153 ~ 29988431 (+) | False | XLOC_030159 |
| TCONS_00061718 | lncRNA | downstream | 53381 | 29902153 ~ 29988431 (+) | False | XLOC_030159 |
| TCONS_00061438 | lncRNA | downstream | 53389 | 29902161 ~ 29902869 (+) | False | XLOC_030159 |
| TCONS_00058969 | mRNA | upstream | 5389 | 29820266 ~ 29825846 (+) | True | XLOC_030156 |
| TCONS_00058968 | mRNA | upstream | 7995 | 29820266 ~ 29823240 (+) | False | XLOC_030156 |
| TCONS_00058962 | mRNA | upstream | 13387 | 29803380 ~ 29817848 (+) | False | XLOC_030155 |
| TCONS_00058964 | mRNA | upstream | 18645 | 29803422 ~ 29812590 (+) | False | XLOC_030155 |
| TCONS_00058965 | mRNA | upstream | 18924 | 29803428 ~ 29812311 (+) | False | XLOC_030155 |
| TCONS_00058973 | mRNA | downstream | 2661 | 29851433 ~ 29896768 (+) | True | XLOC_030158 |
| TCONS_00058977 | mRNA | downstream | 240943 | 30089715 ~ 30090506 (+) | True | XLOC_030163 |
| TCONS_00058979 | mRNA | downstream | 330238 | 30179010 ~ 30209068 (+) | True | XLOC_030165 |
| TCONS_00058980 | mRNA | downstream | 535782 | 30384554 ~ 30391820 (+) | True | XLOC_030166 |
| TCONS_00058981 | mRNA | downstream | 543376 | 30392148 ~ 30411165 (+) | False | XLOC_030167 |
| TCONS_00058963 | other | upstream | 18623 | 29803411 ~ 29812612 (+) | False | XLOC_030155 |
| TCONS_00058961 | other | upstream | 32177 | 29794076 ~ 29799058 (+) | True | XLOC_030154 |
| TCONS_00058952 | other | upstream | 616589 | 29214530 ~ 29214646 (+) | True | XLOC_030148 |
| TCONS_00058939 | other | upstream | 1005095 | 28824612 ~ 28826140 (+) | True | XLOC_030141 |
| TCONS_00058938 | other | upstream | 1012622 | 28812453 ~ 28818613 (+) | True | XLOC_030140 |
| TCONS_00058974 | other | downstream | 141375 | 29990147 ~ 29990221 (+) | True | XLOC_030160 |
| TCONS_00058975 | other | downstream | 141680 | 29990452 ~ 29990544 (+) | True | XLOC_030161 |
| TCONS_00058976 | other | downstream | 149990 | 29998762 ~ 29998847 (+) | True | XLOC_030162 |
| TCONS_00058978 | other | downstream | 317684 | 30166456 ~ 30166572 (+) | True | XLOC_030164 |
| TCONS_00058982 | other | downstream | 543647 | 30392419 ~ 30409240 (+) | True | XLOC_030167 |
