RNA id: TU2629180


Basic Information

Item Value
RNA id TU2629180
length 253
lncRNA type intronic
GC content 0.55
exon number 1
gene id G2298387
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13622217 ~ 13622469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtgtgaatgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccttcctgtgagacgcctaagacagcgctacagggagacaggacggacagctgatcgccctcgcagtggcagaccacgtgtaacaacacctgcacaggatcggtacatccgaacatcacacctgcgggacaggtacaggatggcaacaacaactgcccgagttacaccaggaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629178 lncRNA upstream 2720 13619284 ~ 13619497 (+) True G2298385
TU2629177 lncRNA upstream 5024 13616988 ~ 13617193 (+) True G2298384
TU2629174 lncRNA upstream 12600 13609324 ~ 13609617 (+) True G2298381
TU2629165 lncRNA upstream 27613 13594355 ~ 13594604 (+) True G2298372
TU2629163 lncRNA upstream 29420 13592556 ~ 13592797 (+) True G2298370
TU2629186 lncRNA downstream 5877 13628346 ~ 13629099 (+) True G2298392
TU2629194 lncRNA downstream 27439 13649908 ~ 13650113 (+) True G2298400
TU2629195 lncRNA downstream 27848 13650317 ~ 13650619 (+) True G2298401
TU2629197 lncRNA downstream 30029 13652498 ~ 13652734 (+) True G2298403
TU2629202 lncRNA downstream 44981 13667450 ~ 13667672 (+) True G2298408
XM_036970609.1 mRNA upstream 130629 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1149969 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1149969 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1149969 12453662 ~ 12472248 (+) True LOC110487937
XR_005041309.1 mRNA upstream 1208068 12322871 ~ 12414149 (+) True col8a2
XM_036971044.1 mRNA downstream 228506 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 228506 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 228506 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 522532 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 555850 14178319 ~ 14187277 (+) False LOC110487945
TU2626989 other upstream 1704077 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1713551 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2057627 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2331914 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 3100910 10514954 ~ 10521307 (+) True LOC110487904
TU2629183 other downstream 7593 13630062 ~ 13630795 (+) True G2298390
TU2629574 other downstream 130798 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 391763 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 584697 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 596432 14218901 ~ 14223877 (+) True LOC118936620

Expression Profile