RNA id: TU2629183



Basic Information


Item Value
RNA id TU2629183
length 700
RNA type TUCP
GC content 0.45
exon number 2
gene id G2298390
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13630062 ~ 13630795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


actcacaacaacagacaccattcatggaccatctactcacaacaacagacaccattcatggaccatctactcacaacaacagacaccattcatggaccaactactcacagcaacagacaccatgcatggaccatctactctcaacaacagacaccattcatggaccatctactcacaacaacagacaccattcatggaccatctactcacaacaacagacaccattcatggaccatctactcacaacaacagacaccattcatggaccatctactcacaacaacagacaccattcatggaccacctactctcaacaacagacaccattcatggaccatctactctcaacaacagacaccattcatggaccatctactcacagcaacagacaccattcatggaccatctactcacaacaacagacaccattcatggaccacctactcacagcaacagacaccattcatggaccacctactcacaacaacagacaccattcatggaccacctactcacaacaacagacaccattcatggaccatctactcacaacaacagacaccattcatggaccatctactcacagcaacagacaccattcatggaccatctactcacaacaacagacaccattcatggaccaactactcacaacaacagacaccattcatggaccatctactcacaacaacagacacca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2629186 lncRNA upstream 963 13628346 ~ 13629099 (+) True G2298392
TU2629180 lncRNA upstream 7593 13622217 ~ 13622469 (+) True G2298387
TU2629178 lncRNA upstream 10565 13619284 ~ 13619497 (+) True G2298385
TU2629177 lncRNA upstream 12869 13616988 ~ 13617193 (+) True G2298384
TU2629174 lncRNA upstream 20445 13609324 ~ 13609617 (+) True G2298381
TU2629194 lncRNA downstream 19113 13649908 ~ 13650113 (+) True G2298400
TU2629195 lncRNA downstream 19522 13650317 ~ 13650619 (+) True G2298401
TU2629197 lncRNA downstream 21703 13652498 ~ 13652734 (+) True G2298403
TU2629202 lncRNA downstream 36655 13667450 ~ 13667672 (+) True G2298408
TU2629203 lncRNA downstream 37953 13668748 ~ 13668974 (+) True G2298409
XM_036970609.1 mRNA upstream 138474 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1157814 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1157814 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1157814 12453662 ~ 12472248 (+) True LOC110487937
XM_021559856.2 mRNA upstream 1215913 12322871 ~ 12414149 (+) False col8a2
XM_036971044.1 mRNA downstream 220180 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 220180 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 220180 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 514206 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 547524 14178319 ~ 14187277 (+) False LOC110487945
TU2626989 other upstream 1711922 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1721396 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2065472 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2339759 11285493 ~ 11290303 (+) True G2296150
TU2625227 other upstream 3108755 10514954 ~ 10521307 (+) True LOC110487904
TU2629574 other downstream 122472 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 383437 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 576371 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 588106 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 672941 14303736 ~ 14304232 (+) True G2299191

Expression Profile