RNA id: TU2629202


Basic Information

Item Value
RNA id TU2629202
length 223
lncRNA type intronic
GC content 0.39
exon number 1
gene id G2298408
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13667450 ~ 13667672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGATCAAACATTCGCAAGATAATATATTTGTTTGTAAAGGTTACATACTCAATTAACACGTGTAGAGTACTGTATGTATGAACATAGCCTAATCTCTATGATAGTCTTAATGTAGCTAAACTCATTTTAAAACTACAATAAAGACTTTCACCtaccttcctccctttctccctcctccactacttccctccctcctcctctacttccctccctcctcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629197 lncRNA upstream 14716 13652498 ~ 13652734 (+) True G2298403
TU2629195 lncRNA upstream 16831 13650317 ~ 13650619 (+) True G2298401
TU2629194 lncRNA upstream 17337 13649908 ~ 13650113 (+) True G2298400
TU2629186 lncRNA upstream 38351 13628346 ~ 13629099 (+) True G2298392
TU2629180 lncRNA upstream 44981 13622217 ~ 13622469 (+) True G2298387
TU2629203 lncRNA downstream 1076 13668748 ~ 13668974 (+) True G2298409
TU2629210 lncRNA downstream 14233 13681905 ~ 13682124 (+) True G2298416
TU2628950 lncRNA downstream 17002 13684674 ~ 13684944 (+) True LOC110487938
TU2629215 lncRNA downstream 27817 13695489 ~ 13695691 (+) True G2298421
TU2629219 lncRNA downstream 35718 13703390 ~ 13703744 (+) True G2298425
XM_036970609.1 mRNA upstream 175862 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1195202 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1195202 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1195202 12453662 ~ 12472248 (+) True LOC110487937
XR_005041309.1 mRNA upstream 1253301 12322871 ~ 12414149 (+) True col8a2
XM_036971044.1 mRNA downstream 183303 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 183303 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 183303 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 477329 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 510647 14178319 ~ 14187277 (+) False LOC110487945
TU2629183 other upstream 36655 13630062 ~ 13630795 (+) True G2298390
TU2626989 other upstream 1749310 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1758784 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2102860 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2377147 11285493 ~ 11290303 (+) True G2296150
TU2629574 other downstream 85595 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 346560 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 539494 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 551229 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 636064 14303736 ~ 14304232 (+) True G2299191

Expression Profile