RNA id: TU2629203


Basic Information

Item Value
RNA id TU2629203
length 227
lncRNA type intronic
GC content 0.53
exon number 1
gene id G2298409
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13668748 ~ 13668974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaCTCCTGGGACCAGGCTTCTTAACCACTGCTGGCCTGGTCCCtgatcagtttgtgctgtcttgcctactcctgggaccaggctacttaaCCACTGCTAGCCTGGTCCCtgatcagtttgtgctgtcttaCCTActcctgggaccaggctacttaaccactgttagcctggtccctgatcagtttgtgctgtcttaCCTActcctgggaccaggctacttaaCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629202 lncRNA upstream 1076 13667450 ~ 13667672 (+) True G2298408
TU2629197 lncRNA upstream 16014 13652498 ~ 13652734 (+) True G2298403
TU2629195 lncRNA upstream 18129 13650317 ~ 13650619 (+) True G2298401
TU2629194 lncRNA upstream 18635 13649908 ~ 13650113 (+) True G2298400
TU2629186 lncRNA upstream 39649 13628346 ~ 13629099 (+) True G2298392
TU2629210 lncRNA downstream 12931 13681905 ~ 13682124 (+) True G2298416
TU2628950 lncRNA downstream 15700 13684674 ~ 13684944 (+) True LOC110487938
TU2629215 lncRNA downstream 26515 13695489 ~ 13695691 (+) True G2298421
TU2629219 lncRNA downstream 34416 13703390 ~ 13703744 (+) True G2298425
TU2628955 lncRNA downstream 51217 13720191 ~ 13720732 (+) True G2298179
XM_036970609.1 mRNA upstream 177160 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1196500 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1196500 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1196500 12453662 ~ 12472248 (+) True LOC110487937
XR_005041309.1 mRNA upstream 1254599 12322871 ~ 12414149 (+) True col8a2
XM_036971044.1 mRNA downstream 182001 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 182001 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 182001 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 476027 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 509345 14178319 ~ 14187277 (+) False LOC110487945
TU2629183 other upstream 37953 13630062 ~ 13630795 (+) True G2298390
TU2626989 other upstream 1750608 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1760082 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2104158 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2378445 11285493 ~ 11290303 (+) True G2296150
TU2629574 other downstream 84293 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 345258 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 538192 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 549927 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 634762 14303736 ~ 14304232 (+) True G2299191

Expression Profile