RNA id: TU2629219


Basic Information

Item Value
RNA id TU2629219
length 355
lncRNA type intronic
GC content 0.25
exon number 1
gene id G2298425
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13703390 ~ 13703744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttatcatgtatcatacatgccattagatgtttataatttacagtagtcattatgtcattagatgtttataatttacagtagtcattatgtatggttatcatgtatcatacatgtcattagatgtttataatttacagtagtcattatgtcattagatgtttataatttacagtagtcattatgtatggttatcatgtatcatacatgtcattagatgtttataatttacagtagtcattatgtatggttatcatgtatcatacatgtcattagatgtttataatttacagtagtcattatgtatggttatcatgtatcatacatgtcattagatgtttataatttacagtagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629215 lncRNA upstream 7699 13695489 ~ 13695691 (+) True G2298421
TU2628950 lncRNA upstream 18446 13684674 ~ 13684944 (+) True LOC110487938
TU2629210 lncRNA upstream 21266 13681905 ~ 13682124 (+) True G2298416
TU2629203 lncRNA upstream 34416 13668748 ~ 13668974 (+) True G2298409
TU2629202 lncRNA upstream 35718 13667450 ~ 13667672 (+) True G2298408
TU2628955 lncRNA downstream 16447 13720191 ~ 13720732 (+) True G2298179
TU2628939 lncRNA downstream 23513 13727257 ~ 13731174 (+) False G2298167
TU2628940 lncRNA downstream 23513 13727257 ~ 13731174 (+) False G2298167
TU2628941 lncRNA downstream 23513 13727257 ~ 13731174 (+) False G2298167
TU2628942 lncRNA downstream 23513 13727257 ~ 13731174 (+) True G2298167
XM_036970609.1 mRNA upstream 211802 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1231142 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1231142 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1231142 12453662 ~ 12472248 (+) True LOC110487937
XR_005041309.1 mRNA upstream 1289241 12322871 ~ 12414149 (+) True col8a2
XM_036971044.1 mRNA downstream 147231 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 147231 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 147231 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 441257 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 474575 14178319 ~ 14187277 (+) False LOC110487945
TU2629183 other upstream 72595 13630062 ~ 13630795 (+) True G2298390
TU2626989 other upstream 1785250 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1794724 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2138800 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2413087 11285493 ~ 11290303 (+) True G2296150
TU2629574 other downstream 49523 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 310488 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 503422 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 515157 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 599992 14303736 ~ 14304232 (+) True G2299191

Expression Profile