RNA id: TU2628939


Basic Information

Item Value
RNA id TU2628939
length 3866
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G2298167
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13727257 ~ 13731174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGTTGTCATATTTCTGTGGTAAAAATTACTGCcatttaaaaaggcagtaaaccAACATGTTAAATATACTTCATTTTATTGATCAAAAGTGTTTTATCCATTGATCCTGAGAGACATCGACCTACAATAGGGCTGAGTTCTTTATTTAGCCACCATTACAATCGCTGTTAGTGAAACAATGGGTTTGGTAGGGCCTATGGCAGGATGCTTCAAAATGCCCAAATCCTCAAAATTACTTCAAACCAAATGCTGTAGAGACCAAAACACCCTAACAACTTGCACATATAGATTGGAGGgtattataggaattatgggTTTTGTATAACATTTTCCTTAGAATCCTTTTTTTTCTTCAGGATACACACCGATACAGAACTGTATGTTGTTTCAGAGGGTAGCTGGTTTCTGTATTACAATTCTACCAAGTATTTATACCGACGACAGACTTTTATTAGCTGATATTTGACCTCAACTAAGCATATATCTAAGGTCATTTAAATTttgtacacagtcacacacatagTTATAACCAGTTATAACCATAGGCGAGTACACAAGGTGCTCCATCTCTGCAGGTGATCTGTCCATCATGTCCAGATCACTGATACAGGTGCCCCTCCACCCTCTAGGGATAACTTGTTATCATGTCTCCAGAGAAACCTGGACTAAAAGAAATACGTTTTGGAGAATACACACCAATACTGACTCAGATCGTATCTGAGTTCCGTATTGCAGTTTTATCAAGTTTTTATACCATTGGTAGACTTTGTATATCATTGTCAGATTTTTATATGAACAAAAATATGGTAATGTTGGTTTTGTAGTCATACGATAAGTGGTATAGAAAAGTACAATCTTAGGCGACTATATGTGTAGCTATTTCTCTGTAGATGATCTGTCTAGCTGGTCAAAATGACTGATACAGGTCCCCCTCCACTTCTGGCGGTATGGATAACTTGTTATTATGTCTCCGGAGAAACCTCGATTCAAATCAAATTATTTTATATCAAATGACTATAGGCGGAATTAGCTGGGGTCTAGTGACCTCAAAGGACATTTTTTTGAAAGTCCATATTGATACAGAAACATTAAACAATGATTTAGATTTATTAAGAACAAGTTGACAGACAGAGTCATGAAAATACTGAAGAATTGATTCAAACCATGTTTGGGTTTCATTGATCAAAATGACCCCAGTCGGTAGTTTGAGGGTTAAGGTCTTGAAACATCTGAATCAATTACACAATTAACCAATCAAAGCAGGCGATCTGTCAGGAGGGTGTAGCCTACCTGAAAGTGTTGCTGTAGCATTTCCTCTCTCTCAAGTTGGATCCCAGGTCTTGTTCTAAGTGTATCTCAATTGTTCTTCCTCCCACTGCTTTAGAGCGTCATATTGATCGCTGTGCTGTGCATCCGCTCTCAGCCCCTCAAGAAAACAGGGAAATAAAAAATAAGCTATAGTTTCAGATGTAATGACCAGAAGTGTGTTTGCTACTCAGCTTGTCGGTATTTGTCTCTGttgtgaaagaaagagaggaaggaaaacTCCGAACAGATAGATAGTAAGACAACGCAGCCAAAATGTTCCACTTTGGTCAGAAACGCTGACAGGGTTTTTGTGGAAAATGCAGAGACGTCGAATATCTAATATATAtccaaaaacattttcattgcatctctcttctcactctttctctctctctattgctatgtctgtctatctctctctctctcattctttctcttgTGTGTCTCTGTCACGTTTCAAGTTTGAATAGTCATATGTACAAGGATACACATGGTAGGGCCTATACACCTTCCAACGAATATACAGATCTTACTTGCAGATCTTACTTGCAGATCATACTTGCAGGTCTTACTTGCAGATCTTACTTGCAGATCTTACTTGCAGATCATACTTGCAGgttcccgCTCaataatgcaacaacaataagacatAATCAAATATAAGAATAATAATTATTTCTCATTCCTCAGTCTCCCCTGGATCATGGAAATCCTTATGTAACAATGTAGTCCATTCTAtctgctctcacacacactgggAGTCACGGCCAAGACCTGAGCTGTATAAACCACAGGGGTGTCAGCAGGAGAgatggtgaagagaggagacagagagatgagatgagagaggagagtaaaATGGAGGAGAGATGTGAGGGAAACataagaagagacagagggagtagaATGAGATTACAAAAAGGGAGATTTACTATATAGTGACCtacatagggtcctggtcaacagtagtgcactaattaggaaatagggtgccattttcgATGTAGACCAATAACCTTTGAGTTGATCTTAAAAAGTTAGCTTTCACATTgaaataaaggttcaatcaaaAGTGTTCATTCCATAGCCAACATTTTGAACCTAGATTGACTAGCTaactacacacacaaaacaccccCATCTGACTCATGTTTATATCTATAGCATCTAAATCACTgttctctccactctccactccctTCCCTTcatgttgaatcaacgttgttttcaATGAAATTCCATTGAAcaaacgtggaatagacgttgaattgacgtctgagcccagtgaggagagagaggaatgagagagagagagaaatgagagaacaAGCTAGAAAGACAATATTAAATTGGTGATGGAAAGTATTATAGACTGTGAGCGAGAGCAAAAGGTAGAGACAAAGAGTGAGTGGTCGAAGCAGAGATAGAACTAGAGATGGAGCACAGCGGTGAGTTCTAAGTGTTTATCCAGGGGAATGGCCATTTGTCATGACATTTTCCGAGGCGGTACTCAGACCATCTGTCTAAATATCCCTAATGGTACCGTATGGAACATACACACAGATGGCAAAACAAGAGAGCAGGCCTGTCTAACCTTTACCGCTAATCAGCTGATATGCAGATCTATGGCTACTGATCtgaggtcagttttgcatttcgcCTCCCTAATGGTTTGGGTTAGGGATTTGGGGAGGGTCCCAGATTCCAGATCTGTACCTAAGGGCTAATTCTCTCTGACACGTCATGCAACTGTGAAGGTTTATGATAGATATGCTTCACCTTAGGTCTCTTACGCAGAGGAATGGCTGAATCCTTGTCCTGCTAGTCCCAAATACCACAGCCAGGTGGATAAATAAGACACTACAGAGACAggtaagtgagtgagtgatgaattcacttcctgaattgacaaacttctacagatcCTCACTTTCACTGGTGTTTAAACTGGTCCATTATCATGTGACTGTGCCTAAGTCTACATCATTCCACCAATCAGAGTCCACTTTGTGATCATCTCTGATCTTTTGAAAGGCAGTCTGGGATACCAGAAAACCCATCTGATTGACACAGATATTGACTCCTTTCTCGAACTCTAAAGGGATGTTTTCAGAGAGTTTACTGTTGTGTTGGTTTGTTGAACATGGGCTTTTGAAAAGTTTCGGCATATGAAAATACAATCTGTCTATGAGAGCCTAAATCATGAAACGTCAAAGTTGTGAATCTTGTAAAGATGTTATGAATTGCACGGATGAGGTATTGAAAGCAATGtgactgaaatgtgtcttcataGTATGTGGTTTGATGCAAGAAAATTATGTGTGCTCATTTCTAGATTAATGCGAGTTGTGATAGATGCAAGAAAGAGAATCTATGATCTTGGACTACATGTGTACCTCCAACCTACCATGCTTGAGATGCTGACCTACCTAATCCCACAACCATCAAAACTCTCCCATTGGTGTTACAATGTTGCCCAAAAAAGTCGCTCCTACCCTTTCCTCCCCCATTTATGTTTTTTATACATATGATTGTACAAAGTAGTCCTCTAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2628955 lncRNA upstream 6525 13720191 ~ 13720732 (+) True G2298179
TU2629219 lncRNA upstream 23513 13703390 ~ 13703744 (+) True G2298425
TU2629215 lncRNA upstream 31566 13695489 ~ 13695691 (+) True G2298421
TU2628950 lncRNA upstream 42313 13684674 ~ 13684944 (+) True LOC110487938
TU2629210 lncRNA upstream 45133 13681905 ~ 13682124 (+) True G2298416
TU2629581 lncRNA downstream 25845 13757019 ~ 13757219 (+) True G2298746
TU2629585 lncRNA downstream 30798 13761972 ~ 13764137 (+) True G2298748
TU2629590 lncRNA downstream 33539 13764713 ~ 13764995 (+) True G2298750
TU2629592 lncRNA downstream 34008 13765182 ~ 13765408 (+) True G2298752
TU2629694 lncRNA downstream 153582 13884756 ~ 13885113 (+) True G2298835
XM_036970608.1 mRNA upstream 2268 13507588 ~ 13724989 (+) False LOC110487938
XM_036970609.1 mRNA upstream 235669 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1255009 12425043 ~ 12472248 (+) False LOC110487937
XM_036971820.1 mRNA upstream 1255009 12425043 ~ 12472248 (+) False LOC110487937
XM_036971821.1 mRNA upstream 1255009 12453662 ~ 12472248 (+) True LOC110487937
XM_036971044.1 mRNA downstream 119801 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA downstream 119801 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA downstream 119801 13850975 ~ 14001721 (+) False LOC110487940
XM_021559863.2 mRNA downstream 413827 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 447145 14178319 ~ 14187277 (+) False LOC110487945
TU2629183 other upstream 96462 13630062 ~ 13630795 (+) True G2298390
TU2626989 other upstream 1809117 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 1818591 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2162667 11563547 ~ 11564590 (+) True G2296278
TU2626619 other upstream 2436954 11285493 ~ 11290303 (+) True G2296150
TU2629574 other downstream 22093 13753267 ~ 13753517 (+) True G2298739
TU2629753 other downstream 283058 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 475992 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 487727 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 572562 14303736 ~ 14304232 (+) True G2299191

Expression Profile