RNA id: TU2629738


Basic Information

Item Value
RNA id TU2629738
length 1406
lncRNA type intronic
GC content 0.39
exon number 2
gene id G2298874
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13989009 ~ 13995301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgttgtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactatagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactatagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtTGTCCTCTACGctagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgttgtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacaccaGATACAGTGaagtaactgtagtcctctacactagatacggtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtgactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacattagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacaccagatacagtaactgtagtcctctacaccagatacagtacagtaactgtagtcctctacactagatacagtgactgtagtcctctacacgaGATACagtaactgtagtcctctacactagatacagtaactgtaatcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacattagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacattacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629706 lncRNA upstream 72798 13918416 ~ 13920094 (+) True G2298847
TU2629694 lncRNA upstream 107779 13884756 ~ 13885113 (+) True G2298835
TU2629592 lncRNA upstream 227484 13765182 ~ 13765408 (+) True G2298752
TU2629590 lncRNA upstream 227897 13764713 ~ 13764995 (+) True G2298750
TU2629585 lncRNA upstream 228755 13761972 ~ 13764137 (+) True G2298748
TU2629666 lncRNA downstream 6330 14001631 ~ 14003434 (+) False LOC110487940
TU2629669 lncRNA downstream 6330 14001631 ~ 14003434 (+) False LOC110487940
TU2629670 lncRNA downstream 6330 14001631 ~ 14003434 (+) False LOC110487940
TU2629673 lncRNA downstream 6330 14001631 ~ 14003434 (+) False LOC110487940
TU2629674 lncRNA downstream 6330 14001631 ~ 14003434 (+) False LOC110487940
XM_036970608.1 mRNA upstream 267903 13507588 ~ 13724989 (+) False LOC110487938
XM_036970609.1 mRNA upstream 501304 13274220 ~ 13491588 (+) True LOC118946451
XM_036971819.1 mRNA upstream 1520644 12425043 ~ 12472248 (+) False LOC110487937
XM_021559863.2 mRNA downstream 149700 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 183018 14178319 ~ 14187277 (+) False LOC110487945
XM_021559865.2 mRNA downstream 183022 14178323 ~ 14187277 (+) True LOC110487945
XM_036971574.1 mRNA downstream 212072 14207373 ~ 14225546 (+) False LOC118936620
XM_036971576.1 mRNA downstream 222891 14218192 ~ 14225549 (+) False LOC118936620
TU2629574 other upstream 239375 13753267 ~ 13753517 (+) True G2298739
TU2629183 other upstream 362097 13630062 ~ 13630795 (+) True G2298390
TU2626989 other upstream 2074752 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 2084226 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2428302 11563547 ~ 11564590 (+) True G2296278
TU2629753 other downstream 18931 14014232 ~ 14015587 (+) True G2298884
TU2629857 other downstream 211865 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 223600 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 308435 14303736 ~ 14304232 (+) True G2299191
TU2630211 other downstream 423360 14418661 ~ 14419677 (+) True G2299272

Expression Profile