RNA id: TU2629753


Basic Information

Item Value
RNA id TU2629753
length 1269
RNA type TUCP
GC content 0.46
exon number 3
gene id G2298884
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14014232 ~ 14015587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcctttctccccagcCAAGCCTTCCACACCAGGATCACCctgaaagagtgagagagcgtgtgagaaaaaaaatctattgaTCATCGGCTATTACAAAGATTTTTATTATTACAAATTGCTATTACAAAGCCTATTCCAATTGCATCATACGTGAGTTATTTTGGACACTTCATTATGCGGCTATGGCATTGGTTTAAATCACAGGCTTACTGCTACTCACAAAGTCTCCCTTCGCACCAACTTTTCCTTGGAATCCCTGTGTAAAGAAATGAGTCACACAGTAAATACAGTCAAATACATAATACATTCTAAGAAAGAGCAAGGCCAATATATTGATCCAGCTAAGGACTGCAGGAGACACAGCACACAGTAAGAAAGATGTCGTTTCATCTAAAGACATGGGAGATGACGACTCTCGTACTATCATTTATATTGCTAAGGCTCTGTGTGGGACAACGGCAGCATCTTTATGAGGCTGGAGGATTTGTGGGTCAGCACTGCCACCAACAGGCCAATTGGATAACTGCATGATCACATGTGTATGATATCGACAGGAATGCATCCTTGTTGTGGCTTCGACGTTCAACATTAAAacaaacacacgcatgcactCGCATGGACACACAAACAATATGTCTCGATACAGACACATTCGTAAACTCACAGATGCAAGAGCACACATATATtttacacacaggcacacacaaaaaGATTAAGGGTAtttttcacacagacacacacacacagaccttgtctcCCTTGGTTCCTGAGATGCCTTGAGCCCCTGGGACACCCATAGGCCCTCTCATACCCTTGTTATTTAAAAGTGATCTCTTGTCAGGAACCGGAGTTAGAGAACCACAGATTTAGCCGAAAGTACATGTTTCTGCTGAGATGTGCAGAAGTGACTTACAGCCTTGCCGACAATACCCTGTGGCCCTACAGCTCCCCTCTGGCCTCTGTCAccctgagggagagagaacgagagagagacagagagagagaggcagagagagagagagacagagagacagagagacagagagagagagacagagagagacagagagagagagagagagagacagagcgagagagagggagacagagagagagagacagagagagagagagagagagagagagagagagacagagcgagagagagagagacagagcgagagagagggagacagagagagagagagacagagttagagagagagagagagacagagagagagagagagacagagcgagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629747 lncRNA upstream 2057 14011554 ~ 14012175 (+) True G2298882
TU2629667 lncRNA upstream 10798 13979274 ~ 14003434 (+) False LOC110487940
TU2629666 lncRNA upstream 10798 14001631 ~ 14003434 (+) False LOC110487940
TU2629669 lncRNA upstream 10798 14001631 ~ 14003434 (+) False LOC110487940
TU2629670 lncRNA upstream 10798 14001631 ~ 14003434 (+) False LOC110487940
TU2629791 lncRNA downstream 62872 14078459 ~ 14079886 (+) True G2298916
TU2630089 lncRNA downstream 248498 14264085 ~ 14264524 (+) True G2299161
TU2630094 lncRNA downstream 258259 14273846 ~ 14274111 (+) True G2299166
TU2630100 lncRNA downstream 262346 14277933 ~ 14278233 (+) True G2299172
TU2630138 lncRNA downstream 317490 14333077 ~ 14333310 (+) True G2299208
XM_036971044.1 mRNA upstream 12511 13850975 ~ 14001721 (+) False LOC110487940
XM_036971045.1 mRNA upstream 12511 13850975 ~ 14001721 (+) False LOC110487940
XM_036971046.1 mRNA upstream 12511 13850975 ~ 14001721 (+) False LOC110487940
XM_036970608.1 mRNA upstream 289243 13507588 ~ 13724989 (+) False LOC110487938
XM_036970609.1 mRNA upstream 522644 13274220 ~ 13491588 (+) True LOC118946451
XM_021559863.2 mRNA downstream 129414 14145001 ~ 14175807 (+) True LOC110487944
XM_021559866.2 mRNA downstream 162732 14178319 ~ 14187277 (+) False LOC110487945
XM_021559865.2 mRNA downstream 162736 14178323 ~ 14187277 (+) True LOC110487945
XM_036971574.1 mRNA downstream 191786 14207373 ~ 14225546 (+) False LOC118936620
XM_036971576.1 mRNA downstream 202605 14218192 ~ 14225549 (+) False LOC118936620
TU2629574 other upstream 260715 13753267 ~ 13753517 (+) True G2298739
TU2629183 other upstream 383437 13630062 ~ 13630795 (+) True G2298390
TU2626989 other upstream 2096092 11915196 ~ 11918140 (+) False G2296450
TU2626940 other upstream 2105566 11906707 ~ 11908666 (+) False LOC110487932
TU2626760 other upstream 2449642 11563547 ~ 11564590 (+) True G2296278
TU2629857 other downstream 191579 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other downstream 203314 14218901 ~ 14223877 (+) True LOC118936620
TU2630121 other downstream 288149 14303736 ~ 14304232 (+) True G2299191
TU2630211 other downstream 403074 14418661 ~ 14419677 (+) True G2299272
TU2630335 other downstream 498422 14514009 ~ 14515434 (+) True LOC110489442

Expression Profile