RNA id: TU2630089


Basic Information

Item Value
RNA id TU2630089
length 440
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G2299161
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14264085 ~ 14264524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtttctctttgcttatttgagctgttcttgccataatatggatttagcCCTAGttggtaaaataccatcttctgtataccacaactgattggctcaaacacattaataaggaaagaaattccacaagttaacctttacgagtgtgcaaagctgtcatcaaggcaaagggtggctactttaagttgttgtttaaaactttttttttgttactatgtgactgttatttcatagctttgatgtatttactattattatacaatgtagaaaatagtccaaaataaagaaaaaacattgaatgagtaggtgtctccaaacttttgactggtattgtgtaTGTTTATGTATGTATGAATATGTAATTATATCTAGTTGGGTTTTGGATGCCACACTAAATGTACTGTGTTATCAGCCCAGTAGAGGGCATTTTAACATCTAAAAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2629791 lncRNA upstream 184199 14078459 ~ 14079886 (+) True G2298916
TU2629747 lncRNA upstream 251910 14011554 ~ 14012175 (+) True G2298882
TU2629670 lncRNA upstream 260651 14001631 ~ 14003434 (+) False LOC110487940
TU2630094 lncRNA downstream 9322 14273846 ~ 14274111 (+) True G2299166
TU2630100 lncRNA downstream 13409 14277933 ~ 14278233 (+) True G2299172
TU2630138 lncRNA downstream 68553 14333077 ~ 14333310 (+) True G2299208
TU2630139 lncRNA downstream 69940 14334464 ~ 14334700 (+) True G2299209
TU2630205 lncRNA downstream 132344 14396868 ~ 14397290 (+) True G2299266
XM_021559867.2 mRNA upstream 3989 14242757 ~ 14260096 (+) False LOC110487946
XM_036971578.1 mRNA upstream 3989 14253575 ~ 14260096 (+) False LOC110487946
XM_036971577.1 mRNA upstream 3989 14253576 ~ 14260096 (+) True LOC110487946
XM_036971576.1 mRNA upstream 38536 14218192 ~ 14225549 (+) False LOC118936620
XM_036971575.1 mRNA upstream 38536 14218193 ~ 14225549 (+) False LOC118936620
XR_002468322.2 mRNA downstream 157928 14422452 ~ 14424543 (+) True LOC110487954
XR_002468321.2 mRNA downstream 171381 14435905 ~ 14437911 (+) False LOC110487953
XM_021562149.2 mRNA downstream 249089 14513613 ~ 14517978 (+) False LOC110489442
XM_036971550.1 mRNA downstream 318400 14582924 ~ 14634704 (+) False LOC110489384
XM_036971545.1 mRNA downstream 318400 14582924 ~ 14638902 (+) False LOC110489384
TU2629857 other upstream 40208 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other upstream 40208 14218901 ~ 14223877 (+) True LOC118936620
TU2629753 other upstream 248498 14014232 ~ 14015587 (+) True G2298884
TU2629574 other upstream 510568 13753267 ~ 13753517 (+) True G2298739
TU2629183 other upstream 633290 13630062 ~ 13630795 (+) True G2298390
TU2630121 other downstream 39212 14303736 ~ 14304232 (+) True G2299191
TU2630211 other downstream 154137 14418661 ~ 14419677 (+) True G2299272
TU2630335 other downstream 249485 14514009 ~ 14515434 (+) True LOC110489442
TU2630377 other downstream 318437 14582961 ~ 14585025 (+) False LOC110489384
TU2630375 other downstream 370697 14635221 ~ 14638903 (+) True LOC110489384

Expression Profile