RNA id: TU2630100


Basic Information

Item Value
RNA id TU2630100
length 301
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2299172
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14277933 ~ 14278233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttcaactatgacagacaaaatgagaaaaaaaatccagaaaatcacattgtaggatttttaatttatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacctgtatcaatgtcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagttacactccaaactccactatggccaagaccaaagagctgtcaaaggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630094 lncRNA upstream 3822 14273846 ~ 14274111 (+) True G2299166
TU2630089 lncRNA upstream 13409 14264085 ~ 14264524 (+) True G2299161
TU2629791 lncRNA upstream 198047 14078459 ~ 14079886 (+) True G2298916
TU2629747 lncRNA upstream 265758 14011554 ~ 14012175 (+) True G2298882
TU2629674 lncRNA upstream 274499 14001631 ~ 14003434 (+) False LOC110487940
TU2630138 lncRNA downstream 54844 14333077 ~ 14333310 (+) True G2299208
TU2630139 lncRNA downstream 56231 14334464 ~ 14334700 (+) True G2299209
TU2630205 lncRNA downstream 118635 14396868 ~ 14397290 (+) True G2299266
TU2630214 lncRNA downstream 137426 14415659 ~ 14416343 (+) True G2299275
TU2630215 lncRNA downstream 145230 14423463 ~ 14423815 (+) True G2299276
XM_021559867.2 mRNA upstream 17837 14242757 ~ 14260096 (+) False LOC110487946
XM_036971578.1 mRNA upstream 17837 14253575 ~ 14260096 (+) False LOC110487946
XM_036971577.1 mRNA upstream 17837 14253576 ~ 14260096 (+) True LOC110487946
XM_036971576.1 mRNA upstream 52384 14218192 ~ 14225549 (+) False LOC118936620
XR_002468322.2 mRNA downstream 144219 14422452 ~ 14424543 (+) True LOC110487954
XR_002468321.2 mRNA downstream 157672 14435905 ~ 14437911 (+) False LOC110487953
XM_021562149.2 mRNA downstream 235380 14513613 ~ 14517978 (+) False LOC110489442
XM_036971550.1 mRNA downstream 304691 14582924 ~ 14634704 (+) False LOC110489384
XM_036971545.1 mRNA downstream 304691 14582924 ~ 14638902 (+) False LOC110489384
TU2629857 other upstream 54056 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other upstream 54056 14218901 ~ 14223877 (+) True LOC118936620
TU2629753 other upstream 262346 14014232 ~ 14015587 (+) True G2298884
TU2629574 other upstream 524416 13753267 ~ 13753517 (+) True G2298739
TU2629183 other upstream 647138 13630062 ~ 13630795 (+) True G2298390
TU2630121 other downstream 25503 14303736 ~ 14304232 (+) True G2299191
TU2630211 other downstream 140428 14418661 ~ 14419677 (+) True G2299272
TU2630335 other downstream 235776 14514009 ~ 14515434 (+) True LOC110489442
TU2630377 other downstream 304728 14582961 ~ 14585025 (+) False LOC110489384
TU2630375 other downstream 356988 14635221 ~ 14638903 (+) True LOC110489384

Expression Profile