RNA id: TU2630211


Basic Information

Item Value
RNA id TU2630211
length 1017
RNA type TUCP
GC content 0.48
exon number 1
gene id G2299272
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14418661 ~ 14419677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAATTGTAAGCTATACAAAAATAAAATTACCAGAATTCATATTATTGTGCACCTTTACACAAATTGCATCTTGAGAAATCAATTTGTTATTGTAATTACAAGCCATATTCGTCCAGACTCTTACCTTGAATTAACCGACTAATCAATtaatcaataaaaataaaatgtgccGATCATATAGGCCTAAAACAACCACCAAAATGAAATTCATAGTTAAACCAGAGTTTGAATTCTTTAAATGTTCCGGTTTGAAAGTCTTGTTCTATTTTTGATTGATTTCAATAGCTCAGATGTTGCAAGTCGATTGTAGTTAGTGACTCCGAGAAAAAGTAGAAGCTGTCCGTAGATATGTCCAGATTGTCCACGGGGCTGTCCAGGGATTCTGACAAACTGGGCGAAGCGGCATCGGAGAGGTGAAGGCAAGAATCCGAGGAGAATACTTGGAAGTCGTGTATTGAGACGTCCAGGGCCACGGGACTACCGCCATTGTCCGGGCCAGTTGCAGAGCCGGAGCCTATTGTTGGCACGCAGCCTGGAACAGTGGGTGACGGGTTGAGAAAATGTTTCAGATTTTTGTCATTGCTGCTCAGTGGCGAAACTGTATAACTTTGGGCCTCGCCATTGTGCGGACCAACATTCTGTAGCTGCTGGGAAGAGCTCAGCGAGTTATGCTGAAAGGAGCAGGCCTCTCTTTCCATAAGGGCCCCGGTCACTGTATTGAGGCTCTGCTCAAACAGCGAGCCATCATCCTCCTCGTCGTTGCTCTGGATTCCGTCCCCGGCGCTCAGTCCTTTCCCCTCGCCATTGTGGTTCTCCTTGCATTGGGTCTGCCTCTTGTGCTTCATCCGGCGGTTCTGGAACCACACTTTGACCTGCCGCTCGGTGAGGTCCAGCAGGGCGGCTATCTCCACCCTTCTCGGTCGGCACAGATACTTGTTGAAGTGGAACTCCTTCTCCAGTTCCAGGAGCTGTGTGTTGGTGTATGCAGTCCTCAACCGCCGGgagccccctcccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630214 lncRNA upstream 2318 14415659 ~ 14416343 (+) True G2299275
TU2630205 lncRNA upstream 21371 14396868 ~ 14397290 (+) True G2299266
TU2630139 lncRNA upstream 83961 14334464 ~ 14334700 (+) True G2299209
TU2630138 lncRNA upstream 85351 14333077 ~ 14333310 (+) True G2299208
TU2630100 lncRNA upstream 140428 14277933 ~ 14278233 (+) True G2299172
TU2630215 lncRNA downstream 3786 14423463 ~ 14423815 (+) True G2299276
TU2630217 lncRNA downstream 17242 14436919 ~ 14437889 (+) True LOC110487953
TU2630243 lncRNA downstream 43756 14463433 ~ 14465014 (+) True G2299302
TU2630249 lncRNA downstream 52522 14472199 ~ 14472543 (+) True G2299308
TU2630250 lncRNA downstream 53672 14473349 ~ 14474930 (+) True G2299309
XM_021559867.2 mRNA upstream 158565 14242757 ~ 14260096 (+) False LOC110487946
XM_036971578.1 mRNA upstream 158565 14253575 ~ 14260096 (+) False LOC110487946
XM_036971577.1 mRNA upstream 158565 14253576 ~ 14260096 (+) True LOC110487946
XM_036971576.1 mRNA upstream 193112 14218192 ~ 14225549 (+) False LOC118936620
XR_002468322.2 mRNA downstream 2775 14422452 ~ 14424543 (+) True LOC110487954
XR_002468321.2 mRNA downstream 16228 14435905 ~ 14437911 (+) False LOC110487953
XM_021562149.2 mRNA downstream 93936 14513613 ~ 14517978 (+) False LOC110489442
XM_036971550.1 mRNA downstream 163247 14582924 ~ 14634704 (+) False LOC110489384
XM_036971545.1 mRNA downstream 163247 14582924 ~ 14638902 (+) False LOC110489384
TU2630121 other upstream 114429 14303736 ~ 14304232 (+) True G2299191
TU2629857 other upstream 194784 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other upstream 194784 14218901 ~ 14223877 (+) True LOC118936620
TU2629753 other upstream 403074 14014232 ~ 14015587 (+) True G2298884
TU2629574 other upstream 665144 13753267 ~ 13753517 (+) True G2298739
TU2630335 other downstream 94332 14514009 ~ 14515434 (+) True LOC110489442
TU2630377 other downstream 163284 14582961 ~ 14585025 (+) False LOC110489384
TU2630375 other downstream 215544 14635221 ~ 14638903 (+) True LOC110489384
TU2630658 other downstream 603956 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 603956 15023633 ~ 15024885 (+) False G2299643

Expression Profile