RNA id: TU2630251



Basic Information


Item Value
RNA id TU2630251
length 614
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G2299310
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14488439 ~ 14491064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGTGCCCAGGAATACCAAAGGCACAGACCTGAGTTTTTATAGCTCCCATAGTCTTATACTGCGTTTTTTTCTCTCGGCCAGACACCATCAAACCGACCAGGCGTGATAGGAAGTCGCCACCTACACGGACAAAGTCAGGAGCCGAAGCAGTCCAGCGACAAAAGAAAACTAGACATTCTAAAACTTAACAAAGACAGGTGACAGAAATGTGAGGAGAGGGCGACGGCGGACGACAGAGGAACCGAGGGACCACAAGGAAAAACAGAGCCCATAGTGGGAACCCTATTCAACTCCCTGGTCAATGGGAGGACGTGTCTTTAGccttactatctattgcatcaaTTCAAGGGAAACGACTGACATCAGTCTCGCATTGAACTCCCAAGGACGGAGTGACACAAAACGAGTAAAATGACCTCAGCGACGGAGtggacaaccacaacaacataacaactaACCGTGTGTTGCATGGAATATGGATTATAATCATTCCCGATGTAGCTAAACATTGGCCAGAAAATAACTTAATAATGCAAAAGACACATTTCAAAAATTTCACCAGGACCTTTGacttgtgtacataatgttgcaaTGGCTATAGCTTAATAAATTG

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2630257 lncRNA upstream 6017 14482217 ~ 14482422 (+) True G2299316
TU2630256 lncRNA upstream 9344 14478887 ~ 14479095 (+) True G2299315
TU2630250 lncRNA upstream 13509 14473349 ~ 14474930 (+) True G2299309
TU2630249 lncRNA upstream 15896 14472199 ~ 14472543 (+) True G2299308
TU2630243 lncRNA upstream 23425 14463433 ~ 14465014 (+) True G2299302
TU2630338 lncRNA downstream 24568 14515632 ~ 14515861 (+) True G2299391
TU2630415 lncRNA downstream 109516 14600580 ~ 14601237 (+) False G2299450
TU2630416 lncRNA downstream 109516 14600580 ~ 14601237 (+) True G2299450
TU2630383 lncRNA downstream 147904 14638968 ~ 14642798 (+) False G2299422
TU2630384 lncRNA downstream 147904 14638968 ~ 14642798 (+) False G2299422
XR_002468321.2 mRNA upstream 50528 14435905 ~ 14437911 (+) False LOC110487953
XR_002468322.2 mRNA upstream 63896 14422452 ~ 14424543 (+) True LOC110487954
XM_021559867.2 mRNA upstream 228343 14242757 ~ 14260096 (+) False LOC110487946
XM_021562149.2 mRNA downstream 22549 14513613 ~ 14517978 (+) False LOC110489442
XM_036971550.1 mRNA downstream 91860 14582924 ~ 14634704 (+) False LOC110489384
XM_036971545.1 mRNA downstream 91860 14582924 ~ 14638902 (+) False LOC110489384
XM_036971549.1 mRNA downstream 91860 14582924 ~ 14638902 (+) False LOC110489384
XM_036971546.1 mRNA downstream 91872 14582936 ~ 14638902 (+) False LOC110489384
TU2630211 other upstream 68762 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 184207 14303736 ~ 14304232 (+) True G2299191
TU2629857 other upstream 264562 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other upstream 264562 14218901 ~ 14223877 (+) True LOC118936620
TU2629753 other upstream 472852 14014232 ~ 14015587 (+) True G2298884
TU2630335 other downstream 22945 14514009 ~ 14515434 (+) True LOC110489442
TU2630377 other downstream 91897 14582961 ~ 14585025 (+) False LOC110489384
TU2630375 other downstream 144157 14635221 ~ 14638903 (+) True LOC110489384
TU2630658 other downstream 532569 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 532569 15023633 ~ 15024885 (+) False G2299643

Expression Profile