RNA id: TU2630338


Basic Information

Item Value
RNA id TU2630338
length 230
lncRNA type intronic
GC content 0.34
exon number 1
gene id G2299391
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14515632 ~ 14515861 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTATTGTCCTTAGAACATATGGCCATATAAAGGACATTGTTTTCTTTTTAGATTCGCAATTAAACTATGTAAGTTCGCTTGAAATCATATCAGACAAATCGAGGCCTAGGCTACTCAGACTTTATTTATGTGTGTTCTCAAAACAATGCAGTAAATGCAGGTAGGTGCACGCAACATTTACCCAAAATGAAACGGTGATTCATTTTGTTAATGATTAAACCGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630251 lncRNA upstream 24568 14488439 ~ 14491064 (+) True G2299310
TU2630257 lncRNA upstream 33210 14482217 ~ 14482422 (+) True G2299316
TU2630256 lncRNA upstream 36537 14478887 ~ 14479095 (+) True G2299315
TU2630250 lncRNA upstream 40702 14473349 ~ 14474930 (+) True G2299309
TU2630249 lncRNA upstream 43089 14472199 ~ 14472543 (+) True G2299308
TU2630415 lncRNA downstream 84719 14600580 ~ 14601237 (+) False G2299450
TU2630416 lncRNA downstream 84719 14600580 ~ 14601237 (+) True G2299450
TU2630383 lncRNA downstream 123107 14638968 ~ 14642798 (+) False G2299422
TU2630384 lncRNA downstream 123107 14638968 ~ 14642798 (+) False G2299422
TU2630385 lncRNA downstream 123107 14638968 ~ 14642798 (+) True G2299422
XR_002468321.2 mRNA upstream 77721 14435905 ~ 14437911 (+) False LOC110487953
XR_002468322.2 mRNA upstream 91089 14422452 ~ 14424543 (+) True LOC110487954
XM_021559867.2 mRNA upstream 255536 14242757 ~ 14260096 (+) False LOC110487946
XM_036971550.1 mRNA downstream 67063 14582924 ~ 14634704 (+) False LOC110489384
XM_036971545.1 mRNA downstream 67063 14582924 ~ 14638902 (+) False LOC110489384
XM_036971549.1 mRNA downstream 67063 14582924 ~ 14638902 (+) False LOC110489384
XM_036971546.1 mRNA downstream 67075 14582936 ~ 14638902 (+) False LOC110489384
XM_036971547.1 mRNA downstream 67077 14582938 ~ 14638902 (+) False LOC110489384
TU2630335 other upstream 198 14514009 ~ 14515434 (+) True LOC110489442
TU2630211 other upstream 95955 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 211400 14303736 ~ 14304232 (+) True G2299191
TU2629857 other upstream 291755 14207166 ~ 14223877 (+) False LOC118936620
TU2629858 other upstream 291755 14218901 ~ 14223877 (+) True LOC118936620
TU2630377 other downstream 67100 14582961 ~ 14585025 (+) False LOC110489384
TU2630375 other downstream 119360 14635221 ~ 14638903 (+) True LOC110489384
TU2630658 other downstream 507772 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 507772 15023633 ~ 15024885 (+) False G2299643
TU2630647 other downstream 507864 15023725 ~ 15027132 (+) False G2299643

Expression Profile