RNA id: TU2630528


Basic Information

Item Value
RNA id TU2630528
length 1561
lncRNA type intronic
GC content 0.42
exon number 3
gene id G2299541
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14822575 ~ 14824876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggtgagaaacacagcctagtttaaaggtgagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagagaaacacagcctagtttaaaggggagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacaggctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacattctagtttaaaggggagagaaacacagcctagtttaaaggggagagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggtgagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaatacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggtgagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacagcctagtttaaagtggagtctgtctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630521 lncRNA upstream 5299 14814211 ~ 14817276 (+) False G2299536
TU2630522 lncRNA upstream 7795 14814211 ~ 14814780 (+) True G2299536
TU2630516 lncRNA upstream 33831 14788308 ~ 14788744 (+) True G2299531
TU2630505 lncRNA upstream 68121 14754139 ~ 14754454 (+) True G2299521
TU2630504 lncRNA upstream 71998 14750043 ~ 14750577 (+) True G2299520
TU2630574 lncRNA downstream 54943 14879819 ~ 14880418 (+) True G2299577
TU2630601 lncRNA downstream 96519 14921395 ~ 14922723 (+) True G2299601
TU2630609 lncRNA downstream 105603 14930479 ~ 14930721 (+) True G2299609
TU2630610 lncRNA downstream 106010 14930886 ~ 14931294 (+) True G2299610
TU2630591 lncRNA downstream 144689 14969565 ~ 14970157 (+) False LOC110487975
XM_021559899.2 mRNA upstream 14597 14797945 ~ 14807978 (+) True LOC110487970
XM_036971035.1 mRNA upstream 29052 14761112 ~ 14793523 (+) False LOC110487969
XM_021559901.2 mRNA downstream 70800 14895676 ~ 14908383 (+) False LOC110487973
XM_021559903.2 mRNA downstream 70800 14895676 ~ 14908383 (+) False LOC110487973
XM_021559904.2 mRNA downstream 70800 14895676 ~ 14908383 (+) False LOC110487973
XM_036970679.1 mRNA downstream 70800 14895676 ~ 14908383 (+) False LOC110487973
XM_036970680.1 mRNA downstream 70800 14895676 ~ 14908383 (+) True LOC110487973
TU2630375 other upstream 183672 14635221 ~ 14638903 (+) True LOC110489384
TU2630377 other upstream 237550 14582961 ~ 14585025 (+) False LOC110489384
TU2630335 other upstream 307141 14514009 ~ 14515434 (+) True LOC110489442
TU2630211 other upstream 402898 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 518343 14303736 ~ 14304232 (+) True G2299191
TU2630658 other downstream 198757 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 198757 15023633 ~ 15024885 (+) False G2299643
TU2630647 other downstream 198849 15023725 ~ 15027132 (+) False G2299643
TU2630648 other downstream 198849 15023725 ~ 15024885 (+) False G2299643
TU2631085 other downstream 307391 15132267 ~ 15158541 (+) False LOC110487981

Expression Profile