RNA id: TU2630610


Basic Information

Item Value
RNA id TU2630610
length 409
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2299610
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14930886 ~ 14931294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggTACATTTAATGCGATTTAAGTGCCATATATGAATGTCGGTTTCAAAGAGCAATTTATCCAATATCACATCAATTATAAAAATCCTTAGAGAAAAGTTCTCAAACACGTTCTTCGACATTCACTACAACATGGCGTTCACTACAAGAATGTTCCATACGTTCTAGCTCAAGCTCAAGCAGTCAACCATTGGAATGCATTGTGACTAACAAAGAGATGATTAGAGATAGTCGACTGAAGTATAAATAAATAGATAAGGGTTCGATTGTAGTTGTTAAGGGTTAGATTGTAGTTTCACCCAAAACGGTACCCCTTGTTTCCATAAAGGTATCCCTTGTTTCACTTAAACAACCGGAACGAATGAGACATTGTTCCCCACAACACGATATATCacgtactatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630609 lncRNA upstream 165 14930479 ~ 14930721 (+) True G2299609
TU2630601 lncRNA upstream 8163 14921395 ~ 14922723 (+) True G2299601
TU2630574 lncRNA upstream 50468 14879819 ~ 14880418 (+) True G2299577
TU2630530 lncRNA upstream 106010 14822575 ~ 14824876 (+) False G2299541
TU2630591 lncRNA downstream 38271 14969565 ~ 14970157 (+) False LOC110487975
TU2630587 lncRNA downstream 38972 14970266 ~ 14972149 (+) True LOC110487975
TU2630643 lncRNA downstream 66480 14997774 ~ 14998042 (+) True G2299640
TU2630644 lncRNA downstream 66925 14998219 ~ 14998550 (+) True G2299641
TU2630654 lncRNA downstream 94277 15025571 ~ 15028263 (+) False G2299643
XM_021559905.2 mRNA upstream 12251 14912317 ~ 14918635 (+) True LOC110487974
XM_021559903.2 mRNA upstream 22503 14895676 ~ 14908383 (+) False LOC110487973
XM_036970717.1 mRNA downstream 2349 14933643 ~ 14972153 (+) False LOC110487975
XM_036970718.1 mRNA downstream 2946 14934240 ~ 14972153 (+) False LOC110487975
XM_036970719.1 mRNA downstream 2946 14934240 ~ 14972153 (+) False LOC110487975
XM_036970720.1 mRNA downstream 12852 14944146 ~ 14972153 (+) False LOC110487975
XM_036971842.1 mRNA downstream 85730 15017024 ~ 15017839 (+) True LOC118946541
TU2630375 other upstream 291983 14635221 ~ 14638903 (+) True LOC110489384
TU2630377 other upstream 345861 14582961 ~ 14585025 (+) False LOC110489384
TU2630335 other upstream 415452 14514009 ~ 14515434 (+) True LOC110489442
TU2630211 other upstream 511209 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 626654 14303736 ~ 14304232 (+) True G2299191
TU2630658 other downstream 92339 15023633 ~ 15024931 (+) False G2299643
TU2630662 other downstream 92339 15023633 ~ 15024885 (+) False G2299643
TU2630647 other downstream 92431 15023725 ~ 15027132 (+) False G2299643
TU2630648 other downstream 92431 15023725 ~ 15024885 (+) False G2299643
TU2631085 other downstream 200973 15132267 ~ 15158541 (+) False LOC110487981

Expression Profile