RNA id: TU2630662


Basic Information

Item Value
RNA id TU2630662
length 1253
RNA type TUCP
GC content 0.44
exon number 1
gene id G2299643
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15023633 ~ 15028263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAGAGTTTGTTGGTAAACAGCCTATAATGTAGGCATAATGATTAATCCTTTTATTTCTTTTTAttgaaaacaaacacaaaacaggCAGGTACAATGCACAAGTTACAATTACATCATCTTTCAATCAGTCAATTTCCAATGATGAATCCCATTTCTCCCAGTATTCCTGGCCTCTCTCATTCTGTGTTCTAAAGGTCATAGTAATGATGCCTATGTGAGATGGTGTGCTGCGGTGTGTTCTGCCGTCTTAAAAGAGGAGTCGTGCTGAGGGCCTGACCTTTTTTCACACATCTGGTTCACAGGGCAAAAGGAAAGGGGACATACAGGCTCTACAATGCattcggaagtattcagaccactcccCCTTTTTTTCATATTTGGTTACAATGTAtgcattttacaataaggctgtaattacatttttcccctcagcaatctacatataataccccataatgacaaagcaaaacagggttttatacatttttgcaaatgtattacaaattaaaaacagaaataccttatttacataagcattcagaccctttgctatgagacttgaaattgagctcaggtgcatcctgtttccattgatcatccttgagatatttctacaacttgatttctgcagcactctaccaatcagggctttatggtaaagtggccagacagatgcccctcctcagtaaaaggcacatgacagccacctggagtttgccaaaaggcaccttaaggactctgaccatgagaaacaagattatttggtctgatgaaaccaagattgaactctcaagcctgaatgccaagcgtcacgtctggaggaaacctggcaccatccctacagtgaagcatggtggcagcatcatgctgtggggatgtttttcagtggcagatactgggagactagtcaggaaagatgaacagagcaatgcaatgtacaaagagatccttgatgaaaacctgctccaaagtgctcaggacctcagaactGGGgcaatggttcaccttccaacagaacaacgaccctaagcacacagccaagacaacgcaggagtggcttcgggacaagtctctgaatgtccttgagtgtcccagccaaaGCCTGGATGTGAACcggattgaacatctctggagagacctgaaaatagctgcgcagcgacgctccccatccaacctgacagagcttgagaagatctgcagagaagaacagaagaaactccccaaatacaggtgtgccaagcttgtagcgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630644 lncRNA upstream 25083 14998219 ~ 14998550 (+) True G2299641
TU2630643 lncRNA upstream 25591 14997774 ~ 14998042 (+) True G2299640
TU2630587 lncRNA upstream 51484 14970266 ~ 14972149 (+) True LOC110487975
TU2630591 lncRNA upstream 53476 14969565 ~ 14970157 (+) False LOC110487975
TU2630610 lncRNA upstream 92339 14930886 ~ 14931294 (+) True G2299610
TU2630654 lncRNA downstream 686 15025571 ~ 15028263 (+) False G2299643
TU2630650 lncRNA downstream 812 15025697 ~ 15026402 (+) True G2299643
TU2630664 lncRNA downstream 6810 15031695 ~ 15031920 (+) True G2299644
TU2630665 lncRNA downstream 7368 15032253 ~ 15032472 (+) True G2299645
TU2630666 lncRNA downstream 8075 15032960 ~ 15033255 (+) True G2299646
XR_005041400.1 mRNA upstream 40 15019538 ~ 15023593 (+) True LOC118946527
XM_036971842.1 mRNA upstream 5794 15017024 ~ 15017839 (+) True LOC118946541
XM_036970718.1 mRNA upstream 51480 14934240 ~ 14972153 (+) False LOC110487975
LOC110487978 mRNA downstream 10514 15035399 ~ 15046389 (+) False LOC110487978
XM_036971598.1 mRNA downstream 106853 15131738 ~ 15188784 (+) False LOC110487981
XM_036971847.1 mRNA downstream 305182 15330067 ~ 15398500 (+) True LOC110489387
XM_036971418.1 mRNA downstream 379845 15404730 ~ 15413624 (+) False LOC118946488
XM_021559916.2 mRNA downstream 420562 15445447 ~ 15455152 (+) False LOC110487983
TU2630375 other upstream 384730 14635221 ~ 14638903 (+) True LOC110489384
TU2630377 other upstream 438608 14582961 ~ 14585025 (+) False LOC110489384
TU2630335 other upstream 508199 14514009 ~ 14515434 (+) True LOC110489442
TU2630211 other upstream 603956 14418661 ~ 14419677 (+) True G2299272
TU2630121 other upstream 719401 14303736 ~ 14304232 (+) True G2299191
TU2631085 other downstream 107382 15132267 ~ 15158541 (+) False LOC110487981
TU2631280 other downstream 392341 15417226 ~ 15417507 (+) True G2300167
TU2631539 other downstream 855796 15880681 ~ 15882161 (+) True G2300406
TU2631752 other downstream 1178588 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 1178588 16203473 ~ 16252597 (+) True dss1

Expression Profile