RNA id: TU2630654


Basic Information

Item Value
RNA id TU2630654
length 2693
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G2299643
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15023633 ~ 15028263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaacattttaaaagatttactgagctacagttcatatgaaggaaatcagtcaattaaaatacatcaattaggctctaatctatgtaCTTCACATGACTgcgaatacagatatacatctgttggtccTGGATACCTTAATTAAACATAAAAGTATGGGTGTGGATCATAAAACCCGTCCGTATCTAGTGTGACCCCCATTTGcatcatgcagcgtgacacatctccttcgcatagagttgatcaggctgttgattgtggcctgtgtaatgttgtcccactcctcttcaatggctgtgagaagttgctggatattggtgggaactgaaacacgctgtcgtacacgttgattcAGAAcatcccaaacttgctcaatgggtgacatgtctggtgagtatgcaggccatggaagaactatgACATttacagcttccaggaattgtgtacacgTCCTTGCGACATGGAGCCGTACATTACCATTCTGAAACAcaaggtgatggcggcggatgaagggcacgacaatgggcctcatgatctcaatatctctgtgcattcaaattgccatcgataaaatgcaattgtcttggttgtccatagcttatgcctgcccataccacaacCCCACCGCCACTGGGCATTTTGTTCACAACATtggcatcagcaaaccgcttgcccacacaatgccatacacatggtctacAGTTGAGAGGCTGGTAGgatgtactgtcaaattctctaaaacgacttgaggcggcttatggtaaagaaactAACATAGCAtttgtctggcaacagctctggtcgacattcctgcagtcagcaagtcaattgcacgctcccttaaaACTAGAAACATCTCTAGCATTGTGTTTCGTGACAAAATGGCACATTTTTTagggccttttgtccccagcacaaggcgcacctgtgtaatgaccatgctgtttaatcagcttattgatatgccacacctgtcaggtggatggattatcctgGCAAAGgaaaaaatgctcactaacagggatgtaaacaaatttgtgagcaataagctttttgtgcgtatggaacatttctgggatattttatttcagcccacgaaacattggaccaacactgtacatgatgcgtttatatttttgctcagtataatAATGTTTCAATGTATTCCATGACTATATAACGTTATTGTTTCACTGTGGTGGATTCATCTAAAAGTGATTCCTATGAATACAATGAATTTCATAATAAAAAAGCTGTCATAAAAAATGCCAACCATGATCATTTACGACATCTAGGCAGGTGTTTGGAGAGATGTGCTTTCCGAGTGAAGCTGAAAAGGCAGTGGGGGCAGGGATACGGTCTCTCCCCTGTGTGGGTCTTCATGTGGACTTTGACGTGACTCTGTTCATAAAAGCTCTTCCCACATTCTTGGCAGGAGTATGGCTTTATATCACGGTGAGTGTGGGTCCTCATGTGACTGGACAGAGAACCAGAACGGTTAAACCGGCTGGGGCATTCAGGGCATTCAAAtggcttctccccagtgtgtaGGAGCTTGTGCTTGGACAGATCCCCAGACTGAGTGAAGCTTTTACTGCACTCGGTACAGGTGTATGGTTTCTCACCCGTGTGAGTCAGGTGATGGTTCTTCAGGTGTGAGAGTCGAAAAAACTTCTTGTCGCACACTGTGCAGTGGTAGGGCCTCTCCCCGGTATGTGAGCGCATGTGTAACTTCAACAACCCCAGCCTCAAGAACGCCCGCCCACAAACCCCACAGTGGTAGTTCTTCTCGTTGCTGTGGATCTTCAGGTGTGTTTTCAGATAAGCTTTGTCAGCAAAGTCTTTACCACAAACGGTGCATTTGAAAGGTCTCTCCCCCGAGTGTGTTCGCAGGTGAAGCTTCAGATGGGCCCTGCTTGCATACCGCTTATCGCATTGGGTGCAGGAGAACTTCCGCTCACCAGTGTGAACCGACATGTGAGTCCAGAGGAGCGACTTCCGTTTGAAAGTCTTCCCGCAGTCCTGGCATTTGAACGGCTTGAGCCCCGAGTGTATTAACGAGTGATAACGGTAACCGCTGTTCTCTGAGAAGCGCTTGCCGCACTCCTTACATTCGtacggcttctctccagtgtggatGCGCATGTGAGTGTCCAGGCTCGTAGGAGTACTGAGGATCTTCCCACACTCTGAGCAATGGAAGCCGACTTCCAGACAGACCACAGTCTTAGTGTCCTTAGGTTTAGTGCCCTCTGGTTCTTGACACCGGTGTGGCCCTAGTCCCCAGCAATTttcaaagctcttcccacagtcagcaCAACTGATGTGACCATCGGTGCGAAAAACAGCCATTTTGTGCAAATTCTTGCAGTGCTTCAGCAGGGTTCCCAGGTACGGGAATCTACGGGCACACTGCGGGCAGGGGTGGAGTTTCCCCGGAACCCTGGGGGGACGGACAGGTTTCTGGGGAAGGGCGGAGGGGTGGGCCTGGCGGGTGTGGATGTGTAGCTGTCGTGGGGTATGGAACATGCAGCTGCACTGGGGACAGCTGTGTGTGGGGGCGTACACGGTTTTACTCTTTGAGACGTGGCTTTTCAACATGGCCAGGTACTGCTTCTGGTGTTTGGTCTTGATGTGGTTCTCCAGGAAGTAACAGTCAGTGAAGGAGATGGTGCAGTGTGGACAAGGAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2630644 lncRNA upstream 27021 14998219 ~ 14998550 (+) True G2299641
TU2630643 lncRNA upstream 27529 14997774 ~ 14998042 (+) True G2299640
TU2630587 lncRNA upstream 53422 14970266 ~ 14972149 (+) True LOC110487975
TU2630591 lncRNA upstream 55414 14969565 ~ 14970157 (+) False LOC110487975
TU2630610 lncRNA upstream 94277 14930886 ~ 14931294 (+) True G2299610
TU2630664 lncRNA downstream 3432 15031695 ~ 15031920 (+) True G2299644
TU2630665 lncRNA downstream 3990 15032253 ~ 15032472 (+) True G2299645
TU2630666 lncRNA downstream 4697 15032960 ~ 15033255 (+) True G2299646
TU2630450 lncRNA downstream 6887 15035150 ~ 15045525 (+) True LOC110487978
TU2630447 lncRNA downstream 19467 15047730 ~ 15048936 (+) True G2299478
XR_005041400.1 mRNA upstream 1978 15019538 ~ 15023593 (+) True LOC118946527
XM_036971842.1 mRNA upstream 7732 15017024 ~ 15017839 (+) True LOC118946541
XM_036970717.1 mRNA upstream 53418 14933643 ~ 14972153 (+) False LOC110487975
XM_036970718.1 mRNA upstream 53418 14934240 ~ 14972153 (+) False LOC110487975
XM_036970719.1 mRNA upstream 53418 14934240 ~ 14972153 (+) False LOC110487975
LOC110487978 mRNA downstream 7136 15035399 ~ 15046389 (+) False LOC110487978
XM_036971598.1 mRNA downstream 103475 15131738 ~ 15188784 (+) False LOC110487981
XM_036971847.1 mRNA downstream 301804 15330067 ~ 15398500 (+) True LOC110489387
XM_036971418.1 mRNA downstream 376467 15404730 ~ 15413624 (+) False LOC118946488
XM_021559916.2 mRNA downstream 417184 15445447 ~ 15455152 (+) False LOC110487983
TU2630658 other upstream 640 15023633 ~ 15024931 (+) False G2299643
TU2630662 other upstream 686 15023633 ~ 15024885 (+) False G2299643
TU2630648 other upstream 686 15023725 ~ 15024885 (+) False G2299643
TU2630375 other upstream 386668 14635221 ~ 14638903 (+) True LOC110489384
TU2630377 other upstream 440546 14582961 ~ 14585025 (+) False LOC110489384
TU2631085 other downstream 104004 15132267 ~ 15158541 (+) False LOC110487981
TU2631280 other downstream 388963 15417226 ~ 15417507 (+) True G2300167
TU2631539 other downstream 852418 15880681 ~ 15882161 (+) True G2300406
TU2631752 other downstream 1175210 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 1175210 16203473 ~ 16252597 (+) True dss1

Expression Profile