RNA id: TU2631380


Basic Information

Item Value
RNA id TU2631380
length 5395
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2300260
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15613852 ~ 15619302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTGTGCCACACAGGTAAAAACTATAGGGGGGTTTCATTTAGTGCACACAATACAAGAGACAGATCATAATAATAAACATTGCACAGAAAATAAAATATATCATTTATACATCTTGTCATAAATAAAGTCTATGTATCAATGAATATGAAGTGGGTCTTTGACTTTGAATACCCAACTTCTGACTGGGGTTCTGTGGTTTTGAAGGAGTCCTATAGTATAAGATACATGTTTTGTTGAGTGAGTAGCTCTTTAATGTCAGAGTAACTTTAACCCCTGAATACCATTCAAATAGTTTTTTAAGACTGACAAAGATCTCATTTTTAATCGACTCGAGAGAGTGTCTTCTACAGATCTGGGCACCTTGAATAGGCAGACTAAAGATGGAACCCAGTGAATCACACTCATGATTCACTCAAACTAAAAAAGAACAGTCAGACCAACTTGGATCCAGCTTTGGCCAAATTCCTTTCCTCCGCATGACTTGGATCCAATCGCCTTCTCCTCTCGTCCCATTGATCCAGACAGGCTTATCTGTCTATCACTGGTTTATCCCTATAAGGACATAACTATCTGGATGACTGCATGGGAATGAGGATCCATCTGGTTAGCCAACATATTGACAATAACCttatacagtaggcctagctgTGTCCCAGGgcactggtcaaagtagtgcactactgtatatggaatagggtttcatttgggacaGAGCCCTGGGGTTTTTCATTGGCTAGGGGCTGTATCTCATAGACTAATGGGATAGTACTATAACATTATTTTAAAGGATAAAACTGATTTGACTTGCACCAATAAACTACTAGGTCTATGAACAGTTATGGTAGCTTATAACGGTAATGTAAAATCTAGAATAAATTAATCATGCGGAAACACCTCCCAATTCTACTTGTTAATATCTTGCAAAATGTAAGAAATGACACAATGACATGTAGCCTTCTTTATTGCCTAGCAACGCATTAGCGGATTCCTTTCATATTGCTTTTAGAACTCACAATTTTAACAATTGATTTGTTTTTATTAAACCAAAAAGCATGACATTTTATGAATGCAATAAAATTATGTAATGTCTACCAAAAAACTAAATGATGTTGCACATCAGCTGTCACTTGTTGATTTGTTGCATAGCTATGGCAGTGAAGGCTAcactgaggggagaacggctcataataatgtcagGAACGGCGcacatggaatggcatcaaacacttgGTTTCCAAGTGGTTGATGTATTTGAtaacattccactgattccgcttcagtcattaccacaagcccgtacTCCCCAACTaagttgccaccaacctcctgtgaactGTGGCTATGTTTGGCATGAGTCCGTCCATCATGTGACTATTGAAGCATCAGGGGTTAGAACCTATAAAGGATTAAAAGTCAAGTGAAGAACACAACTGAGGGCTCTATTCAATACATATTGCAGAAAATCGAGCGTTCTATAACGCTTCAGCGATACTGGCTTAACAAAGCCCTAAATAGTGGTAAAGTATTCTGGTGTACTCTTTTCTAAACAACACGATGTCATCGTATCCGTTTTCAGCTCTGTTGACTCCCTCCCCAGTCCCCCCCTCAACCCCCACCTCCCTTCTGTTCTCCATTCTTTCTGCACTGTCATGCCTCGTGAACCCATGATGCACCTCACCATCCCCCCATCATCCTCTCTCGCTCCGTTTGAAGTGAAAGTAAATATTCTGTAGACCACATGGTTCACACAACATGCGGCTATGTCTGCCCTACCTCCTATAGCCTAACCTTCCTCCACATTGAACATTGCTTGTCCATCCACATGTCTGTTTTCTTGCGCCTCTGTCCTTTTCTCAGAGGTGATGGTTGTAATGGGGGTTTAAAACTAAAGGCCTACTTGAAATGTATGAAATGGTGTAGGCTTATAGGAGCCTTGGCTGAGTTACAGTAACAACGTGACAACTGGAAGCCATATTGGAAAGGTGTCACAGTTGAAAATACATCACTTCTGGGAAGCCAAGCAGTTTATTGTGGAGTGAGACTATATGATGTTGTCTCTGAAAGGACAGTTGGCACCTCTGGAATCTGATACATTAAAAACTAATGACAAAACTATATTTCAAATTTGAGCAAAATTAGAGAGACAATATAAAAAGAGCACCTGGGGCAACATTACATAAGGTAATATCAAGTTAAATCAGTATATCAGAATCTGTGTGTTGACTGGCTTCAGTTGAGGCTTGAGCTACCTACTTAAACATTTTGGGGAGATGCACAACCTTTGAAACGTCACAATGAGTCTGTTGTATATGCCTACACATGCCTATTGGTAAATACTGAAGTGTTAGTGGCATGTTGTGTCTGAGATATTAGGCTTATACCATCAAACTGACAAAAAAACTACAATGAAACAGCACTGAACAGACTTTGGCAGCTGAGTGTGGCGACCTCCTCACcttttgatttgtgtgtgtttttgcagaAGAATATGCACCTCCTGAGCACCCTTTAAAGCACATGtgccaaactcattccacggagggctgattgtctgcgggttttcactcctcccttgtacttgagtGATTAATTAAgttcactaattagtaaggaactcccctcacctggtcatCTAGGTCTTTATTGAAATATAAAACCAGCAGACAGTATGGCCTCTTACGGAATGGGTTTGACACCCTGCTTTAAAGCAACTGGTCATCTAGGTCTTTACTGAAATATAAAACCAGCAGACAGTATGGCCTCTTACGGAATGGGTTTGACACCCTGCTTTAAAGCAACTGGTCATCTAGGTCTTTACTGAAATATAAAACCAGCAGACAGTATGGCCTCTTATGGAAgcagtttgacacccctgctttaaaGCAACTGGTCAGGGGAGGGGGGAGTTTGTGTGGGAGACAAACATATCTCAAAGCAACTAATACACAACAGCAACAATAAGAATATTTTCAGCATAACCATAACACTGtgtacaggtagcctagtggttaagagcattgggcagtaacccgaaaggttgctggttcgaatccccggcACGACGAAAGTGGGGGGAAAACCTGCcggtgtgcccttgagcaaggtacttactcctaattgctcctgtaagttgctctggataagagcctctgctaaatgactaaaatgtaaatgcacAGAATGAAATAGATTAAGACTATAATACACAATGGGTCTAATCTTTCAACCAGAGGCTCCCAAAAAAACTGCACTTATTTCATTAAGGCATTTGATAACCCACAAAGTTGTCACGTTGAAGGATCATCAAAGATAGTAGATAACTTAGATGGTTTCCTCAGGCTGTTTACCATTGAAAAAAATTTGTCACGATTCCCTCTCTTGCGTGAACATGCTTTCCTGTGTGAGCTCACAGCTTCTCCATAATGTCTGGCATGCTCaaatgagagagggaagagctgGCTCTGGTCTACTTAGTGTCCACTCTTGCTCGTCCCACCCACCAAACCAGAAAAAGTGAGACGGGCCAATAAGTAGCCCAAAGTGGCTCCACCCCGATCAGAAAAGAATTAGGGAGTCaagtgtctctctttctcttctgtctctggcATCATCTGGTGGTGACCATTTCACCTTCTTCAAACCAAAAGGACAACACTGTTATTTCAATCGATCTCATATTTTTCCAAGATATGATTTTATCAACCAGTTGATTTAATAAATGGAATGTGTTTTTCAAAGGCTGTTTAAGCTCCTCGCTTGCTACAATCACATCCACACATATTAAACAAGCTTCATCTCTGCTTTTATACATACTTTATAAATAGTAATAAGGGAGATTTATAAAACGGCTGATCCACTAATATTATTTCTAATGAAAAGTTGTGTTCAAGCAGTTGGTTTCAGTCAAGAGCTGTCATGGTCATGAGATCGAAGTTGATTtgatatcattggaagattgacacCATCTCTTCCATAAACAGATAGATTATGTGGTACTGAAAACTCAAGAGAAATTTGGCATTGAGTTTCACTTCCAGAGCTTGCTTAAACTCAATACTGTACTGTGCAATTAACCTAAAAAGAAAACAGCAATCTTTGGTAAATGAATTAATTAAATGAATTATTGGTCAAATGGACAGCTCACTAAACCCTCAACCCCACCTACCTCTAGCCCAACACCCTTTCCAGTGTAAGATTCTGCATTTTTGGAACATGTGAAGATATGCATGGCTACTGCAACTGCACTAGATCTGCTGACAGTAATAGGAATACATTAATCAGCGATGTAAGTAGCTAGACTAAGAGTTAGTGATAACGTTAAACTAAACTGTAGTAGATTGTTAGTTTCTATCGTCTCTTGTTGTGGGAACTGCCCAGTCTGGTGCCTGTATCATCTACCCCTCTATCACTCTGGTTCTCCCCATCCCAATCTGTCCCTAAGGGGTTGGCTTTCAAAATACACaacaacagagaaacacagagagagggttaaCCAGGACCAGAGATAGACATGGCAGCCAAATGGATAGCCACCTGTCATGGCAGCTAAATGGATAGCCACCGGTCATGGCAGCCAAATGGATAGCCACCGGTCATGGCAGCCAAATGGATAGCCATCTGTCATGGCAGCCAAATGAAGAGCTACACAATGAgaaagaggagagtgagagagttcAGATCAAGACAGTTCTTTCATCATTATAGCAGTGGAAGTGAAGACTTAAGAACAGAAGTAGGAAGTAGACAGTCTATGCCAGGCTGAAGccgaggagtctgggaaggatgGTCTTTGGAATAATGAGTCCTGAGGTGCTTATTGCTGTGTCCTGAAGCCAGAGGAGGCTGTATGGAGAAGCCTCTCTCAGCCTGCAGGCCTGGAGCTTGTTTTGGTGCCATCAACCTTGAGTTGGGTTGGGGGGGGCGGTTGGGGTATCAAAACCCCTAGGCTGCCGTAAGGGGAGGTGGGTGCAAGGGGGTAAGGGGTTAAGAGTTGAAGTTCTTGGGGTGGTTGTTGTTGGTTCCCCCAAAGGTCAGAGTGGAAACTGGTTGAGTTGTTCCCCCAAATTTTGGCGTGGGGGTAAGGGAGTAAGAGCAGGGCCTCAGGGGCTGGTTGGGTTGCTCCCCCAGggtagggaggggaagagggtatgggCTGAAGGGTAGACACTCTGGGGCTAGTTGAGTTGCTCCCTCAGGGTAGGGGAAGAGGGTGCTGAGTTCCTGGAGTGCATGTCTCTACTTGAGTCGGCGGTGATGGTGGCTCTGCATGTCTTCCATAGTGACCCTACCCCACGCACCGATCACGAACGCCTCAATCTCACACTCGTTCTCACCACGAGCGATACGGAAGTAGCCGTTCTCCCCCCAGTTCTTCCCCCACGAGTTGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631352 lncRNA upstream 67906 15544931 ~ 15545946 (+) True G2300236
TU2631239 lncRNA upstream 155292 15456671 ~ 15458560 (+) False G2300147
TU2631410 lncRNA downstream 8465 15627767 ~ 15628215 (+) True G2300284
TU2631386 lncRNA downstream 27745 15647047 ~ 15647601 (+) True G2300262
TU2631441 lncRNA downstream 62149 15681451 ~ 15682337 (+) True G2300313
TU2631454 lncRNA downstream 80517 15699819 ~ 15700088 (+) True G2300325
TU2631457 lncRNA downstream 92196 15711498 ~ 15712156 (+) True G2300328
XM_021559923.2 mRNA upstream 3396 15607628 ~ 15610456 (+) True LOC110487988
XM_021559918.2 mRNA upstream 139382 15458695 ~ 15474470 (+) True LOC110487984
XM_021559916.2 mRNA upstream 158700 15445447 ~ 15455152 (+) False LOC110487983
XM_021559915.2 mRNA upstream 158700 15445486 ~ 15455152 (+) True LOC110487983
XM_036971418.1 mRNA upstream 200228 15404730 ~ 15413624 (+) False LOC118946488
XM_021559947.2 mRNA downstream 430826 16050128 ~ 16058601 (+) False mterf3
XM_036971470.1 mRNA downstream 430940 16050242 ~ 16058601 (+) False mterf3
XM_021559946.2 mRNA downstream 431142 16050444 ~ 16058601 (+) False mterf3
XM_036971471.1 mRNA downstream 432549 16051851 ~ 16058601 (+) True mterf3
XM_021559948.2 mRNA downstream 439542 16058844 ~ 16062141 (+) True LOC110488002
TU2631280 other upstream 196345 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 455311 15132267 ~ 15158541 (+) False LOC110487981
TU2630647 other upstream 586720 15023725 ~ 15027132 (+) False G2299643
TU2630662 other upstream 588967 15023633 ~ 15024885 (+) False G2299643
TU2631539 other downstream 261379 15880681 ~ 15882161 (+) True G2300406
TU2631752 other downstream 584171 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 584171 16203473 ~ 16252597 (+) True dss1
TU2632763 other downstream 905208 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 1017237 16636539 ~ 16639641 (+) True LOC110488017

Expression Profile