RNA id: TU2631520


Basic Information

Item Value
RNA id TU2631520
length 1526
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G2300390
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15817660 ~ 15823630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttatttagttattatttTTTTCCTCACAAACCCAAAGTTTGCTTACAAAAAAgaacaaaaataaaatgtgtaCCTATCCATTGCATATCATGCTGGCAGTTTAAACTACATGCAAAACAACAATAAGAAGAACAGCTATGATAATGGTCATTACTAAATAAGAAAGGGAAGGAAAAGGGAGGGATGGTCATTTCAAAAGAAACCTTGACAAGTTACAACCAGTATTAAGAAAAGACTATAAAAAGGGGTCCTTGCTCCAGTGAAgtctttttccttttttttttttacattaggcTTTCTCTACGAGCAAGGAAGGAGAACCAAAAACCTCTCTGGATAGGGGAGAGACTGCATATAAGGCAGAGAAAGGCCTAACCACTCCCTGCTCTAAGAATGATAGTGATCAGTGTGGTGATTCatgaagagatggagggggaaggaAGAGGAAAGAAAGATGGAAGAGGGCCACTGAAGAGGTGAGTATGATCACTAGGCCATGGGAAAGAGATACTGCACCATATTGGACGGACACACACTCACAAGGGTCATACATACTAAATACAAACTCCATCATACAGTTAGAAGCCCTTTCATTGATGGCATGTCTCGGCAAAGTGAACAAAACGAAGAGGAACTAACAACAAACTATGAattgatccatcacgactggtgtGAGTCTTTCATACAATTTACAATTAATTATTGTGCGCTAGCTTAGAGTATGGCTTTATAGTTTTTTCTTTTAAAGTCTACACATTAAGACATTACAACAAAAGGGCATGATTCATGTTCTCTTGTAGACCAAACAAGGACCAAGCCTTCCATAGGATTCATCCCAAATtgcagacagaaCATAAGACACCTACCCCTATACGGTGTacttcacagagagacagaagacatACAGATTATACAGCAAGGGTTGACAGACACTGAGGAAGAACAGAGAGTTGGTCACTAAAGAGGAGGAAAGTTGGGTCCTGGAGGATTCAGCATTTGGATACCCTGTGTGAGGCTGTCGTGAATGGGCATCAGGTGAGGCCTTTCTGGGGAACGTATCAGGTGAGTGTGGGTGCCAGGAGAAACTaacggaggcagagagagatgataTGACATGGGAATGAGGGAGAGTTGTCGGGCAGTCCCTTTGGTATCTGACCCAGTGTACTGAATAAAGAACTGTTGTTGTCAGAGAGTCCCTTGTAATTATCATGTCATATGTATTGAATGAGCGTGAGGgcacatcccaaattgcaccctattccctatatagtgtgtaggtaatagggtgccatttgggacatatcctAGGAGGTCCCTTGGCTGTTTGAGCCAGTTGCCCTTATGGATGGTAACAGGTGGTGAGATCAATGGTTGGATGGTCTGGTGGGCAGGCGGATGCTTCCGGAGCCTCAGTCTCCGCTGACCTGCGTGGTGACCTGTCCGTCGGCCGTCTGGTTGGTGGACTGGATGAACATTGGCTGGCTCAGGTCCTGACCCGCCGGCATCGTCACCTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631480 lncRNA upstream 59113 15757996 ~ 15758547 (+) True G2300351
TU2631459 lncRNA upstream 102852 15714580 ~ 15714808 (+) True G2300330
TU2631457 lncRNA upstream 105504 15711498 ~ 15712156 (+) True G2300328
TU2631454 lncRNA upstream 117572 15699819 ~ 15700088 (+) True G2300325
TU2631441 lncRNA upstream 135323 15681451 ~ 15682337 (+) True G2300313
TU2631533 lncRNA downstream 445 15819725 ~ 15820520 (+) True G2300400
TU2631527 lncRNA downstream 7296 15826576 ~ 15864039 (+) True G2300394
TU2631538 lncRNA downstream 60058 15879338 ~ 15879573 (+) True G2300405
TU2631581 lncRNA downstream 75443 15894723 ~ 15895034 (+) True G2300438
TU2631584 lncRNA downstream 77928 15897208 ~ 15897409 (+) True G2300441
XM_021559923.2 mRNA upstream 207204 15607628 ~ 15610456 (+) True LOC110487988
XM_021559918.2 mRNA upstream 343190 15458695 ~ 15474470 (+) True LOC110487984
XM_021559916.2 mRNA upstream 362508 15445447 ~ 15455152 (+) False LOC110487983
XM_021559915.2 mRNA upstream 362508 15445486 ~ 15455152 (+) True LOC110487983
XM_036971418.1 mRNA upstream 404036 15404730 ~ 15413624 (+) False LOC118946488
XM_021559947.2 mRNA downstream 230848 16050128 ~ 16058601 (+) False mterf3
XM_036971470.1 mRNA downstream 230962 16050242 ~ 16058601 (+) False mterf3
XM_021559946.2 mRNA downstream 231164 16050444 ~ 16058601 (+) False mterf3
XM_036971471.1 mRNA downstream 232571 16051851 ~ 16058601 (+) True mterf3
XM_021559948.2 mRNA downstream 239564 16058844 ~ 16062141 (+) True LOC110488002
TU2631280 other upstream 400153 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 659119 15132267 ~ 15158541 (+) False LOC110487981
TU2630647 other upstream 790528 15023725 ~ 15027132 (+) False G2299643
TU2630662 other upstream 792775 15023633 ~ 15024885 (+) False G2299643
TU2631539 other downstream 61401 15880681 ~ 15882161 (+) True G2300406
TU2631752 other downstream 384193 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 384193 16203473 ~ 16252597 (+) True dss1
TU2632763 other downstream 705230 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 817259 16636539 ~ 16639641 (+) True LOC110488017

Expression Profile