RNA id: TU2631585


Basic Information

Item Value
RNA id TU2631585
length 1296
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2300442
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15898002 ~ 15899297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggaattacaaccagagtgatggcaaGAActgtgacctttctcttgcatttcaaagatggtgagAGAAAACGatcggttgtttttttctttgtattttattCCTTTgttttatattctcctacatttaattcacatttacacaaacttcaaagtgtttcatttgaaatggtaccaagaatatgcatatccttgcttcagggcctgagctacaggcagtaaGATGtcatttaggcgaaaattgaaaaaaaaagggggctatccctaagAAGATTTATTAAATGGACACAACattggcattgaggaatacaacacatcagtcatcggcttcatcaataagtgaatcgatgacgtcgtccccacagtgactgtacgtacatatcccaaccagaagccatagattacaggcaacacccgcattgagctaaaggctagagctgccactttcaaggagcgggagactaatctggacgcttataagaaatcccgctatgccctcagataaACCATCAAACACCGGCTGGTTTACACCGGCTACACAGGCTCTctgctacaccggctctgacgctcatcagatgtgacagggcttgaaaactattatggactccGAAAGGAAACCCagacgcaagctgcccagtgatgcgagcctaacagacgagctaaatgccttttatgctcgcttcgaggcaagcaacacttgcacgagagcaccagctgttctggatgcaccacttggatttgatttgacaacaGACCAAAACCTGAAGGGAGATAACAATGTATGCATGCCGCATCATTAGCCATAAAACATAAATCTGGACAACAAATAACTGAGGATGACTCCATTTGACCTCCTTAGAGAACAACATTTTACCTTGTGGTGTCTCGGTTAGAATGTGGCAAGCAGTGACTCAGCCACATCCAATGGCTCATTTAGCATTTCATGTAAAATATCCAAAACAAGGAGCGGTTTCCATtagatagcacagccacaaagtaaaaatTGCTATATTGAAAAAATTAACATACaccaaaatgtgctttttggttttcatttaaggttaggcagTGTGGTTAAGTTTAAATTGTAGAAATAAGTGGGGTTAATGACTTTggggctgtggtaactagtgtcatgacattggcctgtgggtaaggtttatgaccccccataaatacctttctcccttccctctctcttgactctacaaagggactcttgaatagcctttgttaaacagagagtctgggaacatcaaacatgtggagggaaaggaaccatatttcggtaatagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631584 lncRNA upstream 593 15897208 ~ 15897409 (+) True G2300441
TU2631581 lncRNA upstream 2968 15894723 ~ 15895034 (+) True G2300438
TU2631538 lncRNA upstream 18429 15879338 ~ 15879573 (+) True G2300405
TU2631527 lncRNA upstream 33963 15826576 ~ 15864039 (+) True G2300394
TU2631521 lncRNA upstream 74372 15817660 ~ 15823630 (+) True G2300390
TU2631586 lncRNA downstream 60 15899357 ~ 15900387 (+) True G2300443
TU2631587 lncRNA downstream 1133 15900430 ~ 15900823 (+) True G2300444
TU2631518 lncRNA downstream 5578 15904875 ~ 15907953 (+) True G2300388
TU2631553 lncRNA downstream 11789 15911086 ~ 15911367 (+) True G2300415
TU2631590 lncRNA downstream 13262 15912559 ~ 15912947 (+) False G2300446
XM_021559923.2 mRNA upstream 287546 15607628 ~ 15610456 (+) True LOC110487988
XM_021559918.2 mRNA upstream 423532 15458695 ~ 15474470 (+) True LOC110487984
XM_021559916.2 mRNA upstream 442850 15445447 ~ 15455152 (+) False LOC110487983
XM_021559915.2 mRNA upstream 442850 15445486 ~ 15455152 (+) True LOC110487983
XM_036971418.1 mRNA upstream 484378 15404730 ~ 15413624 (+) False LOC118946488
XM_021559947.2 mRNA downstream 150831 16050128 ~ 16058601 (+) False mterf3
XM_036971470.1 mRNA downstream 150945 16050242 ~ 16058601 (+) False mterf3
XM_021559946.2 mRNA downstream 151147 16050444 ~ 16058601 (+) False mterf3
XM_036971471.1 mRNA downstream 152554 16051851 ~ 16058601 (+) True mterf3
XM_021559948.2 mRNA downstream 159547 16058844 ~ 16062141 (+) True LOC110488002
TU2631539 other upstream 15841 15880681 ~ 15882161 (+) True G2300406
TU2631280 other upstream 480495 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 739461 15132267 ~ 15158541 (+) False LOC110487981
TU2630647 other upstream 870870 15023725 ~ 15027132 (+) False G2299643
TU2631752 other downstream 304176 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 304176 16203473 ~ 16252597 (+) True dss1
TU2632763 other downstream 625213 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 737242 16636539 ~ 16639641 (+) True LOC110488017
TU2632840 other downstream 770310 16669607 ~ 16676671 (+) False G2301522

Expression Profile