RNA id: TU2631518


Basic Information

Item Value
RNA id TU2631518
length 2999
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G2300388
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15904875 ~ 15907953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acgacagctttgcacactcttggtattctctcaaccagcttcatggaggtagtcacctggaatgcatttcaattaacaggtgtgccttgttaaaagtgcatttgtggaatttctttccttcttaatgcatttgagccaatcagttgtgttgtaacaaggtaggggtggtatacagaagatagccctatgtggtaaaaaaacaagtccatattatggcaagaacagctcaaataagcagagaaacAACAGATCATCTTtaatacatgaaggtcagtcaatgtggaaaattccaagaactttgaacgcttcttcaagtgcagtcgcaaaaaccatcaagtgctatgatgaaactggctctcatgaggaccgacacaggaaaggaagacccagagttacctctgctgcagaggatatgttcattagagttaccagcctcagaaattacagcctaaataattgcttcacagagttcatgtaacagacacatctcaacatcaactgttcaaaggagactgcgtgaatcaggccttcatggtaaaattgctgcaaagaaaccactactaaaggacaccaataagaagaagagacttggttgggccaagaaacacaagcaacggACATTAGACAGGGGAAAtcagtcctttggtctgatgagtccaaatgtgagatttttggttccaactgtgtctttgtaagacgcagagtaggtgaacggatgatctctgcatgtgtggttctcaccataaagcatggaggtggtggtgtgatggtgctttgctggtgacaccgtctgtgatttatttagaattgaaggcacacttaaccagcatggctagcacagcattgtgcagtgatacgccatcccatctggtttgcacttagtggaattatcatttgtttttcaacaggacaatgacccaacatacctccaggctgtgtaagggctatttgaccaaggaaagtgatgagtgctgcatcagatgacctggcgtccacaatcacccaacctcaatccaaaggagatgttttgggatgagttggaccgcagagtgaagaaacagcagccaacaagtgctcagaatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctggttgagagaatgccaagagcgtgcaaagctgtcatcaagctaaagggtggctactttgaagaacctaaaatatatttgtttaacacttatttcatagttttgatatcttcactattattcaacaatgtagaaaatagtaaaaaataaagaaaaacccttgaatgagtaggtgtccaaactttttaaattttatttttttattacccCATTTTCGTGTTATCCAATTGCTAGTTAGTCtcgtctcatcactgcaactcccgtatggacacaggagagacaaaggtcgagagccgcgcgtcctccaaaacacaacccaaccaagccgcactgctacTTGACACAatacccacttaacccggaagccagccgcaccaatgtgtcggaggaaacgcgtacacctggcgaccatgtcagcatgcactgcacccggcccgccacaggagtcactagtgcgcgatggcACAAGGGCATCCTTGCCGGACAACCCCCCaatccggatgacgctgggccaattgtgcgccaccccatgggtctcccggtcgtggccggctgcgacagagcctggactcaaacccagaatctctagtggcacagctagcactgtgatgcagtgccttagaccactgcgccactcgggaggcgtgtccaaacttttgactggtactgtacatacattatTATTCATGTCTATTAGTGTTGTACATCCATGTTAACAACACAAACGATATTCACATATTGTGGAGTGGGTTAGAGGTGCGCACTCTCGCTTTAATAGCTTGGAGTTTTGGTCTTTGTACTGGTTAGCAATGCTTAGTGATGGCatcagtttatatatatatgagggagggatggggagaaagtatgtgatatatatatatatatatatatatatattagtgagCATCACAGCCATACACTCCCCGGGCATGCCTAGAGAGAGCTGGTTAGGGAACTAAGCGTCATATACATTTCACACAGAACTATGTACAGCTACGTAACAAGCAGGCTAGGAGAGGTATCCCTCTGGAGGGTTTTTATTCATCTATTCAGCTTATCTCAGCTGTTTCAGGTGCCATGCAGAGTTAATTTACATTGGCAGGAAAACAAGGGAACACCAGAGGGGGCGAATATAGCAGGAAAGGTGTTGTTCCTAGGTTTCTTCCTTAAAAAGCGCTGGCCTGCATCACAGCGTGGCTTTCTCTATCAGATAGCATATCACTCGCTCTCTCTACAGTGCTTAATTTACAAGGCAAGGAAGAGCGCCAAAATCGCAGAGGACAGGAAAGTTCTATAGAATTTGTTCAGCTAATGTTGTTCAGAAGTGATTTACTAGTTAGCTACCATATCTCTGTAAGTAGAAGCAGATTGCCAAGGAGGACCGAACAAGCAGAAAGCATAAAAACAAACAAGGAATGTTAAAAAGAAGAAGGAATAACTTACAACATACTTAAATAGAACTTCAAATAAATAACTTCAAAAATGTGCCCTTCTTTGCTGCACTCTATGGCAGGCCTGCTGCAATAGGTGACAGAACCCTTTTTTCTGTCACCCAATTCGTCTCCTGAAGGGGGTGGGATGATGGCGGGGAGGTGTAACAGACAAATTGGAGGGAACCTCAAAAAGTGGAACAGATCATGCAAAAAGATAGCGAGGGGAAAAGACCATCATTCAATCCTTCTGGCTgccttcctctccctttcctctagAGGGCGTCGCTCCATCACTCACGGGAACGGCCCACGATAGCCAGGATGTAGAGGAAGATGTTGATGATGTCTGTGTAGAGGTTGAGAGCAGCAAAGATGTACTCctctggactcagagccagcttCTTGTTGCCCAGGAGGAGCTGGGTGTCCACAGCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631587 lncRNA upstream 4052 15900430 ~ 15900823 (+) True G2300444
TU2631586 lncRNA upstream 4488 15899357 ~ 15900387 (+) True G2300443
TU2631585 lncRNA upstream 5578 15898002 ~ 15899297 (+) True G2300442
TU2631584 lncRNA upstream 7466 15897208 ~ 15897409 (+) True G2300441
TU2631581 lncRNA upstream 9841 15894723 ~ 15895034 (+) True G2300438
TU2631553 lncRNA downstream 3133 15911086 ~ 15911367 (+) True G2300415
TU2631590 lncRNA downstream 4606 15912559 ~ 15912947 (+) False G2300446
TU2631592 lncRNA downstream 4606 15912559 ~ 15913397 (+) False G2300446
TU2631589 lncRNA downstream 4612 15912565 ~ 15912947 (+) True G2300446
TU2631593 lncRNA downstream 6031 15913984 ~ 15914233 (+) True G2300447
XM_021559923.2 mRNA upstream 294419 15607628 ~ 15610456 (+) True LOC110487988
XM_021559918.2 mRNA upstream 430405 15458695 ~ 15474470 (+) True LOC110487984
XM_021559916.2 mRNA upstream 449723 15445447 ~ 15455152 (+) False LOC110487983
XM_021559915.2 mRNA upstream 449723 15445486 ~ 15455152 (+) True LOC110487983
XM_036971418.1 mRNA upstream 491251 15404730 ~ 15413624 (+) False LOC118946488
XM_021559947.2 mRNA downstream 142175 16050128 ~ 16058601 (+) False mterf3
XM_036971470.1 mRNA downstream 142289 16050242 ~ 16058601 (+) False mterf3
XM_021559946.2 mRNA downstream 142491 16050444 ~ 16058601 (+) False mterf3
XM_036971471.1 mRNA downstream 143898 16051851 ~ 16058601 (+) True mterf3
XM_021559948.2 mRNA downstream 150891 16058844 ~ 16062141 (+) True LOC110488002
TU2631539 other upstream 22714 15880681 ~ 15882161 (+) True G2300406
TU2631280 other upstream 487368 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 746334 15132267 ~ 15158541 (+) False LOC110487981
TU2630647 other upstream 877743 15023725 ~ 15027132 (+) False G2299643
TU2631752 other downstream 295520 16203473 ~ 16212890 (+) False dss1
TU2631753 other downstream 295520 16203473 ~ 16252597 (+) True dss1
TU2632763 other downstream 616557 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 728586 16636539 ~ 16639641 (+) True LOC110488017
TU2632840 other downstream 761654 16669607 ~ 16676671 (+) False G2301522

Expression Profile