RNA id: TU2631891



Basic Information


Item Value
RNA id TU2631891
length 282
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2300686
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16370789 ~ 16371154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCAAACTGGAGTTTAAACAGAGAGAATCCTGGTCTGTAGATTCCAAACTGGAGTTCCAACAGAAAGAATCCTGGTCTGTAGATTCCAAACTGGAGTTCCAACAGAGAGAATCCTGGTCTATAGATTCCAAAATGGAGGTTGAACAGAGAGAATCCTAGTCTGTAGATTCCAAACTGGAGTTTAAACAGAGAGAATTCTGGTCTATAGATTCCAAAATGGAGGTTGAACAGAGAGAATCCTGGTCTGTAGATTCCAAACTGGAGTTTAAACAGAGAGAATTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2631872 lncRNA upstream 23687 16330720 ~ 16347102 (+) True G2300670
TU2631871 lncRNA upstream 25598 16330720 ~ 16345191 (+) False G2300670
TU2631873 lncRNA upstream 27998 16336504 ~ 16342791 (+) True G2300671
TU2631864 lncRNA upstream 51419 16318915 ~ 16319370 (+) True G2300663
TU2631806 lncRNA upstream 153529 16215859 ~ 16217260 (+) True G2300614
TU2631897 lncRNA downstream 16613 16387767 ~ 16388925 (+) True G2300692
TU2631929 lncRNA downstream 54788 16425942 ~ 16429571 (+) True G2300716
TU2631941 lncRNA downstream 82968 16454122 ~ 16455724 (+) True G2300727
TU2631910 lncRNA downstream 94442 16465596 ~ 16466173 (+) True G2300701
TU2631953 lncRNA downstream 96110 16467264 ~ 16467787 (+) True G2300738
XM_036971473.1 mRNA upstream 19746 16228573 ~ 16351043 (+) True LOC110488013
NM_001160587.1 mRNA upstream 157952 16203496 ~ 16212837 (+) False dss1
XR_005041344.1 mRNA upstream 207362 16146895 ~ 16163427 (+) False LOC118946491
XR_005041345.1 mRNA upstream 207362 16150307 ~ 16163427 (+) False LOC118946491
XM_021559960.2 mRNA upstream 227003 16141291 ~ 16143786 (+) True LOC110488010
XM_021559967.2 mRNA downstream 92409 16463563 ~ 16487955 (+) False LOC110488016
XM_036970996.1 mRNA downstream 92429 16463583 ~ 16480606 (+) False LOC110488016
XR_005041306.1 mRNA downstream 92429 16463583 ~ 16485916 (+) False LOC110488016
XM_036970995.1 mRNA downstream 92429 16463583 ~ 16487955 (+) True LOC110488016
XM_021559969.2 mRNA downstream 232445 16603599 ~ 16636889 (+) False LOC110488017
TU2631753 other upstream 118192 16203473 ~ 16252597 (+) True dss1
TU2631752 other upstream 157899 16203473 ~ 16212890 (+) False dss1
TU2631539 other upstream 488628 15880681 ~ 15882161 (+) True G2300406
TU2631280 other upstream 953282 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 1212248 15132267 ~ 15158541 (+) False LOC110487981
TU2632763 other downstream 153356 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 265385 16636539 ~ 16639641 (+) True LOC110488017
TU2632840 other downstream 298453 16669607 ~ 16676671 (+) False G2301522
TU2632885 other downstream 414214 16785368 ~ 16788539 (+) False LOC110488019
TU2632933 other downstream 455911 16827065 ~ 16834385 (+) True LOC110488022

Expression Profile