RNA id: TU2631953



Basic Information


Item Value
RNA id TU2631953
length 248
lncRNA type intronic
GC content 0.42
exon number 2
gene id G2300738
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16467264 ~ 16467787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cactacagttactacagagcaggtacattaacgttataacacccctcactacagttactacagagcaggtacagtaacgttataacacccctcactacagttactacagagcaggtacagtgaTGTTATAccacccctcactacagttactacagagcaggtacaataacgttataacacccctcactacagttactacagagcaggtacagtaatgttataacacccctcactacagttactacaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2631910 lncRNA upstream 1091 16465596 ~ 16466173 (+) True G2300701
TU2631941 lncRNA upstream 11540 16454122 ~ 16455724 (+) True G2300727
TU2631929 lncRNA upstream 37693 16425942 ~ 16429571 (+) True G2300716
TU2631897 lncRNA upstream 78339 16387767 ~ 16388925 (+) True G2300692
TU2631889 lncRNA upstream 92938 16365399 ~ 16374326 (+) True G2300684
TU2631954 lncRNA downstream 210 16467997 ~ 16468196 (+) True G2300739
TU2631955 lncRNA downstream 6839 16474626 ~ 16474836 (+) True G2300740
TU2631906 lncRNA downstream 20228 16488015 ~ 16491781 (+) True G2300698
TU2632733 lncRNA downstream 24554 16492341 ~ 16492704 (+) True G2301422
TU2632734 lncRNA downstream 25031 16492818 ~ 16493177 (+) True G2301423
XM_036971473.1 mRNA upstream 116221 16228573 ~ 16351043 (+) True LOC110488013
NM_001160587.1 mRNA upstream 254427 16203496 ~ 16212837 (+) False dss1
XR_005041344.1 mRNA upstream 303837 16146895 ~ 16163427 (+) False LOC118946491
XR_005041345.1 mRNA upstream 303837 16150307 ~ 16163427 (+) False LOC118946491
XM_021559960.2 mRNA upstream 323478 16141291 ~ 16143786 (+) True LOC110488010
XM_021559969.2 mRNA downstream 135812 16603599 ~ 16636889 (+) False LOC110488017
XM_021559970.2 mRNA downstream 135812 16603599 ~ 16636889 (+) False LOC110488017
XM_021559972.2 mRNA downstream 135812 16603599 ~ 16636889 (+) False LOC110488017
XM_021559971.2 mRNA downstream 135813 16603600 ~ 16636889 (+) False LOC110488017
XM_021559974.2 mRNA downstream 317546 16785333 ~ 16786839 (+) False LOC110488019
TU2631753 other upstream 214667 16203473 ~ 16252597 (+) True dss1
TU2631752 other upstream 254374 16203473 ~ 16212890 (+) False dss1
TU2631539 other upstream 585103 15880681 ~ 15882161 (+) True G2300406
TU2631280 other upstream 1049757 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 1308723 15132267 ~ 15158541 (+) False LOC110487981
TU2632763 other downstream 56723 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 168752 16636539 ~ 16639641 (+) True LOC110488017
TU2632840 other downstream 201820 16669607 ~ 16676671 (+) False G2301522
TU2632885 other downstream 317581 16785368 ~ 16788539 (+) False LOC110488019
TU2632933 other downstream 359278 16827065 ~ 16834385 (+) True LOC110488022

Expression Profile