RNA id: TU2631906


Basic Information

Item Value
RNA id TU2631906
length 3643
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G2300698
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16488015 ~ 16491781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTCCATATAGTTTCAACTCTGAGCATTTCACCTTTTTGTTTTTTACTGCTTACAAATATTCGTCAATCTCGGAAGTTTAGACAGACGTTTATCTCCAATGTTTTTTGGGGCCTAAAGGGAATTTAGTAGAATCAACTGTAAATCTTGGTGACTCATTTTTTTGTTCTACCCTCACTTGTTGAATAAGACAAGAGCTCAAACATTCATTCAAGGTTTCCTATGAAGACAGAAAATAGATATTGAAGACATTGAGGTATCTAGTACATTTACTCTAAACCAAGTCCAACTGAGTTTAAGTATAAGTTATGTGAATATTGAGATACATTTTCTATCATTCTGTTATATTTTTCAATGACTAAAACGATTGCATTTTAGAGGCCGGCTAGGTCTTTTATACATTAAGTATTTATTGAATAACGTTGTGTGCCAGAGAGCAAAATGGGAGTATTATCACATTTCTGTCATTAGGGACACGGTAAGACTGAGTTGAATCAAATGTTTGACTGGTGCCCAGTGTGGGTATTCTTTGATGTGTTAACTGGAGCAGTCATTACAACATTTAATTTCCTGGTATACACTAAATAGTCACTATTATTACACTCCTTAGCAATAAGAAATCACATAAAAGACTATGTACACTTACTACCATTTAATCCAATAACAGCTAAGTATTTGTAACTAGTCAATATTTGTATGTGCAttgaaacaaaataaaaatagtttGAGACTAACACTGAAGTGCCAacttttatttctctctttctggttTTTAACATGTATGGTTTTAAATCACACGATCTCGGGATGTTGAAGGCATTTCATATTTTTCAATGtatcacccacccacccagtaaGTGCTGTGATGTCATATTTAACCGACCTGGGAGGAGTTATCTATCAATGGAAGTTGCTGATTGGACCTCACACGGTGGGCGGAGTCCTAACTTGAGATTATTGCACATCATTTATTATTGTTGCCGTGAATAGATGATTTACCAATATACATTATTTGGTTCTCACTCTGCCTTTTGTCCCTCTgccagggccttcagaaagtattcataccccttgacgtattccacattttgttgagttacagcctgcattcaaaatgcattaaataaataaaacatctcacccatctacacacaataccccatgataacagtgaaaacatgtttgtagaaagtttagcaaatgtatttaaaatgaaatacaggaaaatctcatttacataggtattcacaccCATGTTTCAATACAttgtagaagcacatttggcGGCGATTTCAGCTTTGAGTCATATTGGGTATGTctgatcagctttgagtcgtcttgggtatgtctgtatcagttttgagtcgtcttgggtatgtctgtatcagttttgagtcgtcttgggtatgtctgtatcagctttgagtcgtcttgggtatgtctgtatcagctttgagtcgtcttgggtatgtctgatcagctttgcacatctggatttggggattttctcccattcttccttacAGATTTTCTCAAACTCTTAAGTTAGATGGGGAAAGGCGGTGAACAgaaatcttcaagtctttccaaagattttcaataggattcaagtctgggctttggctggcacactcaaggactttcacattcttgttctgaagccattgcagcgttgctttggctgtatgcttgaggtcgttgtcctgttggtacgtaaatcttcgccccagtctgttgtttgcactctgaagcaggttcttaATGATTTgactgtatttggctccattcattgttccctgtATATCCttaagtctcccagtccctgccactgaaaagcatcccccatagcacgatgctgccaccaccatgcttcacaatagGGATGGTTTTCTTTTACACAtagcactttgcattcaggccaaataataaatgtgtctcatcagaccacatcatCCTTCAGCCTTATGACCTGTCTTTCACGTGCTGTCGtatgcctttttctcaggagtggcttccgtctggccactctcccataaagcccagcttggtgaagtgctgtagagactgttgtcctggTGGCAGggtctcccatcacagccattgaactctgaaGTAATgtctgaccaaggtccttcttgcccagtTGATCAGTTTGGTCAGCTCTAGTCTAGATggaaaaaaatatggaactatttcccaatgatggagaccactgtgctcttggaaacgttcaacactctagaaattgttttatacccttcaccagatatacagtgagcttcattttgttgttttggctctgtgcaGACTGTCAGGTTTAAGTTGAAGGTATTTTAATCTACATATGGTGAACCGGcccatattcatagcatgcaatgactacatcaagctctTCAAACTGGCTGGATGCATTTGCTATTTGTTTTAGTTGTTTGATTATCTTGTGCCCATTGGAAAATAATggtaaatgtattgtgtcattttggagtcacttttattttaaataagaatagaatatgtttctaaacatcCTAACATGTTTTACCTCCCCTGATATTGTAATGGTGAAAGGTTAGCATGtgttgggggtatgatatttgtgcatgcttggaatatgggaccaaatactcaacttttgactatttaatacacaagtgaattcgtcccaatacttttggtcccctagaATTGGGGGaacatgtacaaaaagtgctgtaatttctaaacggttcaccctatggatgaaaataccctcaaattacaGTCGGCACTTTAACCTcttagtcattgtatcatttcaaatccaaagtgctggagtacagagccaaaaccaCCAATATTTCATTATCTCAAGACTTTGAGCTTACTGTATGCCTAAAAACAATCTCAGCGAtcggacagttccttggacttcatggtatagtttctgctctgacatgccctgtcaactgtgggacttatatagacaggtgtgtttctttctaaatcatgtccaaacaaatGGATTGGCCACaggtgacatctcaaggatgatggaAGGACatttggatgcacctgagctcaatctgGAGTGTGtggaaaggggtgtgaatacttatgtaaatttgatatttctatatttcattttcaataaatttccaaaaatgtataaaaacatgtttttacttcatcgttatggggtattgtgtgtagatgaatgagaaacatattttgattattttttaattcagcctgtaacaacataatgtggaataagtcaaggggtatgaatactttctgaatgcgctgtatgtGCCTGCAGTGCTTCCATTTAGCAGCCTTTGCAAGTGCTTCAGCTTCAGTCAGAAAGTGATTATGGTAACAACAATTTCTCTCTACTAACTACAGTATTGATTCACTCCTGTATTCATTTGTTTTTTAGATTCGTTTTTCATTAAAAAAGGACCTGATTTTTAAGGGTTGATGATCAATGTTTTCCCTCATCGCTATTATTTGATCCTATCATGTTGTCAAGGCCGATTTGTTACAAACTGAATCAGAGGGGAAGGTTCTGACAGTACAGTCAAGTTTACCATGTGAATAACTGATAAGAACTACCAACTGTATCAACTACCATCGCTGAACACAGCAtaataaaacacatt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631955 lncRNA upstream 13179 16474626 ~ 16474836 (+) True G2300740
TU2631954 lncRNA upstream 19819 16467997 ~ 16468196 (+) True G2300739
TU2631953 lncRNA upstream 20228 16467264 ~ 16467787 (+) True G2300738
TU2631910 lncRNA upstream 21842 16465596 ~ 16466173 (+) True G2300701
TU2631941 lncRNA upstream 32291 16454122 ~ 16455724 (+) True G2300727
TU2632733 lncRNA downstream 560 16492341 ~ 16492704 (+) True G2301422
TU2632734 lncRNA downstream 1037 16492818 ~ 16493177 (+) True G2301423
TU2632737 lncRNA downstream 1534 16493315 ~ 16493821 (+) True G2301426
TU2632744 lncRNA downstream 6413 16498194 ~ 16498398 (+) True G2301433
TU2632755 lncRNA downstream 13686 16505467 ~ 16505696 (+) True G2301444
XM_021559967.2 mRNA upstream 60 16463563 ~ 16487955 (+) False LOC110488016
XM_036970995.1 mRNA upstream 60 16463583 ~ 16487955 (+) True LOC110488016
XR_005041306.1 mRNA upstream 2099 16463583 ~ 16485916 (+) False LOC110488016
XM_036970996.1 mRNA upstream 7409 16463583 ~ 16480606 (+) False LOC110488016
XM_036971473.1 mRNA upstream 136972 16228573 ~ 16351043 (+) True LOC110488013
XM_021559969.2 mRNA downstream 111818 16603599 ~ 16636889 (+) False LOC110488017
XM_021559970.2 mRNA downstream 111818 16603599 ~ 16636889 (+) False LOC110488017
XM_021559972.2 mRNA downstream 111818 16603599 ~ 16636889 (+) False LOC110488017
XM_021559971.2 mRNA downstream 111819 16603600 ~ 16636889 (+) False LOC110488017
XM_021559974.2 mRNA downstream 293552 16785333 ~ 16786839 (+) False LOC110488019
TU2631753 other upstream 235418 16203473 ~ 16252597 (+) True dss1
TU2631752 other upstream 275125 16203473 ~ 16212890 (+) False dss1
TU2631539 other upstream 605854 15880681 ~ 15882161 (+) True G2300406
TU2631280 other upstream 1070508 15417226 ~ 15417507 (+) True G2300167
TU2631085 other upstream 1329474 15132267 ~ 15158541 (+) False LOC110487981
TU2632763 other downstream 32729 16524510 ~ 16525394 (+) True G2301452
TU2632809 other downstream 144758 16636539 ~ 16639641 (+) True LOC110488017
TU2632840 other downstream 177826 16669607 ~ 16676671 (+) False G2301522
TU2632885 other downstream 293587 16785368 ~ 16788539 (+) False LOC110488019
TU2632933 other downstream 335284 16827065 ~ 16834385 (+) True LOC110488022

Expression Profile