RNA id: TCONS_00058994


Basic Information

Item Value
RNA id TCONS_00058994
length 500
RNA type processed_transcript
GC content 0.45
exon number 4
gene id XLOC_030171
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30624183 ~ 30672482 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATGATGTAAACACAACAGCTTTGTTAGCCTTTTTATGTCTTTTTAAGACATCTTTGAATATGCGTGTGAGGTGTTTCTAGTTATGTGTGCTGTATGCATCAGACATTCAGCCAATGGTCTgtATTAACCCACCTGAGAGTGATGTCGCACCTGTGTATCGGCGTGTTGATTGGCCTGCTGTATCTGAACATTGGGAATGATGCCAGCAAAGTGTTCAACAACACTGGCTTCCTGTTCTTCTCTATGCTGTTTCTCATGTTTGCTGCTCTCATGCCCACCGTCCTAACATTTCCACTGGAGATGGGTGTGTTCATAAGAGAGCATCTTAATTACTGGTACAGTTTAAAGGCGTATTACTTGGCTAAGACCATGGCTGACATTCCATTCCAGGTCATTTGTCCGATTATGTACTGCAGTATAGTGTACTGGATGACAGAGCAACCCCCAGAGGCAGGCAGATATCTGCTGTTTATGGCTCTGTCCACCTCCACTGCCCTG

Function

GO:

id name namespace
GO:0033344 cholesterol efflux biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-39 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol efflux. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG4 (ATP binding cassette subfamily G member 4).

Ensembl:

ensembl_id ENSDART00000136586

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061719 lncRNA upstream 680690 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061718 lncRNA upstream 680690 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061717 lncRNA upstream 716205 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061716 lncRNA upstream 716205 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061720 lncRNA upstream 716205 29927543 ~ 29952916 (+) False XLOC_030159
TCONS_00061722 lncRNA downstream 52999 30723268 ~ 30724619 (+) False XLOC_030174
TCONS_00059000 lncRNA downstream 53714 30723983 ~ 30727648 (+) True XLOC_030174
TCONS_00061723 lncRNA downstream 110161 30780430 ~ 30916825 (+) False XLOC_030177
TCONS_00061724 lncRNA downstream 110161 30780430 ~ 30921998 (+) False XLOC_030177
TCONS_00061725 lncRNA downstream 110161 30780430 ~ 30974079 (+) False XLOC_030177
TCONS_00058991 mRNA upstream 56392 30608057 ~ 30612729 (+) True XLOC_030170
TCONS_00058989 mRNA upstream 60497 30596822 ~ 30608624 (+) False XLOC_030170
TCONS_00058988 mRNA upstream 62318 30596632 ~ 30606803 (+) False XLOC_030170
TCONS_00058987 mRNA upstream 62476 30596477 ~ 30606645 (+) False XLOC_030170
TCONS_00058986 mRNA upstream 73749 30588856 ~ 30595372 (+) True XLOC_030169
TCONS_00058995 mRNA downstream 10535 30680804 ~ 30697908 (+) False XLOC_030172
TCONS_00058996 mRNA downstream 12468 30682737 ~ 30694260 (+) True XLOC_030172
TCONS_00058997 mRNA downstream 28991 30699260 ~ 30701891 (+) True XLOC_030173
TCONS_00059001 mRNA downstream 71461 30741730 ~ 30749493 (+) False XLOC_030175
TCONS_00059003 mRNA downstream 71519 30741788 ~ 30753167 (+) False XLOC_030175
TCONS_00058990 other upstream 60583 30607838 ~ 30608538 (+) False XLOC_030170
TCONS_00058982 other upstream 259881 30392419 ~ 30409240 (+) True XLOC_030167
TCONS_00058978 other upstream 502549 30166456 ~ 30166572 (+) True XLOC_030164
TCONS_00058976 other upstream 670274 29998762 ~ 29998847 (+) True XLOC_030162
TCONS_00058975 other upstream 678577 29990452 ~ 29990544 (+) True XLOC_030161
TCONS_00058998 other downstream 52860 30723129 ~ 30727648 (+) False XLOC_030174
TCONS_00058999 other downstream 53641 30723910 ~ 30726617 (+) False XLOC_030174
TCONS_00059004 other downstream 73577 30743846 ~ 30749041 (+) True XLOC_030175
TCONS_00059006 other downstream 110331 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059020 other downstream 878043 31548312 ~ 31548787 (+) True XLOC_030185

Expression Profile

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