RNA id: TU2632779


Basic Information

Item Value
RNA id TU2632779
length 225
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G2301467
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16548129 ~ 16548353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCAGACTGGTGCCGTCCACCTCCACGATCTGGTCGTTCACCTTGATCCTACGACACAACATACTGAGGTCACAGAAAGGTCACACACAGGTAAGAGATACAGGTTACTGTAGGATCTACTGAGCTGTGGCTTGGCTGGTCTAGTGGTAAAGCCGTAGCCTCTGGTACACATGGCTGCGGCATAGGTTTGAATCAGGCCAACTActtgtcattctctctctatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2632770 lncRNA upstream 7093 16533287 ~ 16541036 (+) True G2301458
TU2632760 lncRNA upstream 31115 16512985 ~ 16517014 (+) True G2301449
TU2632759 lncRNA upstream 36350 16510368 ~ 16511779 (+) True G2301448
TU2632755 lncRNA upstream 42433 16505467 ~ 16505696 (+) True G2301444
TU2632744 lncRNA upstream 49731 16498194 ~ 16498398 (+) True G2301433
TU2632864 lncRNA downstream 111674 16660027 ~ 16660338 (+) True G2301536
TU2632845 lncRNA downstream 121254 16669607 ~ 16686597 (+) False G2301522
TU2632846 lncRNA downstream 121254 16669607 ~ 16693934 (+) False G2301522
TU2632849 lncRNA downstream 121254 16669607 ~ 16686597 (+) False G2301522
TU2632843 lncRNA downstream 141932 16690285 ~ 16693934 (+) True G2301522
XM_021559967.2 mRNA upstream 60174 16463563 ~ 16487955 (+) False LOC110488016
XM_036970995.1 mRNA upstream 60174 16463583 ~ 16487955 (+) True LOC110488016
XR_005041306.1 mRNA upstream 62213 16463583 ~ 16485916 (+) False LOC110488016
XM_036970996.1 mRNA upstream 67523 16463583 ~ 16480606 (+) False LOC110488016
XM_036971473.1 mRNA upstream 197086 16228573 ~ 16351043 (+) True LOC110488013
XM_021559969.2 mRNA downstream 55246 16603599 ~ 16636889 (+) False LOC110488017
XM_021559970.2 mRNA downstream 55246 16603599 ~ 16636889 (+) False LOC110488017
XM_021559972.2 mRNA downstream 55246 16603599 ~ 16636889 (+) False LOC110488017
XM_021559971.2 mRNA downstream 55247 16603600 ~ 16636889 (+) False LOC110488017
XM_021559974.2 mRNA downstream 236980 16785333 ~ 16786839 (+) False LOC110488019
TU2632763 other upstream 22735 16524510 ~ 16525394 (+) True G2301452
TU2631753 other upstream 295532 16203473 ~ 16252597 (+) True dss1
TU2631752 other upstream 335239 16203473 ~ 16212890 (+) False dss1
TU2631539 other upstream 665968 15880681 ~ 15882161 (+) True G2300406
TU2631280 other upstream 1130622 15417226 ~ 15417507 (+) True G2300167
TU2632809 other downstream 88186 16636539 ~ 16639641 (+) True LOC110488017
TU2632840 other downstream 121254 16669607 ~ 16676671 (+) False G2301522
TU2632885 other downstream 237015 16785368 ~ 16788539 (+) False LOC110488019
TU2632933 other downstream 278712 16827065 ~ 16834385 (+) True LOC110488022
TU2633200 other downstream 638212 17186565 ~ 17193117 (+) True G2301841

Expression Profile