RNA id: TU2632843



Basic Information


Item Value
RNA id TU2632843
length 412
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G2301522
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16669607 ~ 16693934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGACAACAAGGGGTGTGGCCACACGGGGTAGCCCTCTCAGAAATGTGCATTTAAACAAGTGTAGTGACTTACAGACACATAACATACAATCTCTACACACCAATGTAAAATTACAATAATTATTGAACAAGGAAAATGTCAAAGGATTTTAAAGTTCACACAAAACAGCTGGGTTTAATTTGCTTACCCTGTCACCTCGAGGCCCCTTAGCTCCTCTTGGGCCCTATTGGCATGATGCTAGCAATGAAGTTACTGCAAGCAGCAACAGAATCCGGTTATCCACAAAGCTGAGCATGTCTAAGCAGACATGCAGACTCCTTGTGCTGCAGTGCCCTGTTTTAACTACTTCAAGCAGGCATACAGTTGTGGTGACTAGAATAACTCCAAGCTTGGAAACCTGCTGCCGTGATGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2632845 lncRNA upstream 3688 16669607 ~ 16686597 (+) False G2301522
TU2632849 lncRNA upstream 3688 16669607 ~ 16686597 (+) False G2301522
TU2632864 lncRNA upstream 29947 16660027 ~ 16660338 (+) True G2301536
TU2632779 lncRNA upstream 141932 16548129 ~ 16548353 (+) True G2301467
TU2632770 lncRNA upstream 149249 16533287 ~ 16541036 (+) True G2301458
TU2632886 lncRNA downstream 91434 16785368 ~ 16788539 (+) True LOC110488019
TU2632925 lncRNA downstream 103809 16797743 ~ 16798178 (+) True G2301596
TU2632926 lncRNA downstream 104829 16798763 ~ 16799279 (+) True G2301597
TU2632927 lncRNA downstream 105429 16799363 ~ 16802406 (+) True G2301598
TU2632928 lncRNA downstream 108677 16802611 ~ 16802958 (+) True G2301599
XM_021559969.2 mRNA upstream 53396 16603599 ~ 16636889 (+) False LOC110488017
XM_021559970.2 mRNA upstream 53396 16603599 ~ 16636889 (+) False LOC110488017
XM_021559972.2 mRNA upstream 53396 16603599 ~ 16636889 (+) False LOC110488017
XM_021559971.2 mRNA upstream 53396 16603600 ~ 16636889 (+) False LOC110488017
XM_036970995.1 mRNA upstream 202330 16463583 ~ 16487955 (+) True LOC110488016
XM_021559974.2 mRNA downstream 91399 16785333 ~ 16786839 (+) False LOC110488019
XM_021559977.2 mRNA downstream 136774 16830708 ~ 16834652 (+) False LOC110488022
XM_021559976.2 mRNA downstream 136776 16830710 ~ 16834652 (+) False LOC110488022
XM_036971174.1 mRNA downstream 152800 16846734 ~ 16955570 (+) False calcr
XM_036971175.1 mRNA downstream 201195 16895129 ~ 16955570 (+) False calcr
TU2632840 other upstream 13614 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 50644 16636539 ~ 16639641 (+) True LOC110488017
TU2632763 other upstream 164891 16524510 ~ 16525394 (+) True G2301452
TU2631753 other upstream 437688 16203473 ~ 16252597 (+) True dss1
TU2631752 other upstream 477395 16203473 ~ 16212890 (+) False dss1
TU2632885 other downstream 91434 16785368 ~ 16788539 (+) False LOC110488019
TU2632933 other downstream 133131 16827065 ~ 16834385 (+) True LOC110488022
TU2633200 other downstream 492631 17186565 ~ 17193117 (+) True G2301841
TU2635466 other downstream 2083411 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 2307408 19001342 ~ 19015593 (+) False LOC110488049

Expression Profile