RNA id: TU2632925



Basic Information


Item Value
RNA id TU2632925
length 436
lncRNA type intronic
GC content 0.37
exon number 1
gene id G2301596
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16797743 ~ 16798178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTAacacggaaacaaacactcacaaaccaacagtgaaacccaggctacctaagtatgattctcattcagagacaactaacgacacctgcctctgattgagaaccatactaggccgaaacagaaaccaaacatagaaaaacaaacatagactgcccaccccaactcacgccctgaccatactaaaaaaaagacaaaacaaaggaaataaaaggtcagaacgtgacatacacccctaccttttttgttTAAAGTATCTGTGAACCACACATGCATGGTTGTATTCCAAGTGAAAtggctgatttccttatatgaactgtaactcagtaaaatcatagaaattgttgaatgttgcatttatatttttgttcagtatacatgccGTGTAATATACTTGTGCTACAATGcgtgctaaaatgtttattctactgagacattt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2632886 lncRNA upstream 9204 16785368 ~ 16788539 (+) True LOC110488019
TU2632846 lncRNA upstream 103809 16669607 ~ 16693934 (+) False G2301522
TU2632843 lncRNA upstream 103809 16690285 ~ 16693934 (+) True G2301522
TU2632845 lncRNA upstream 111146 16669607 ~ 16686597 (+) False G2301522
TU2632849 lncRNA upstream 111146 16669607 ~ 16686597 (+) False G2301522
TU2632926 lncRNA downstream 585 16798763 ~ 16799279 (+) True G2301597
TU2632927 lncRNA downstream 1185 16799363 ~ 16802406 (+) True G2301598
TU2632928 lncRNA downstream 4433 16802611 ~ 16802958 (+) True G2301599
TU2632929 lncRNA downstream 5103 16803281 ~ 16803573 (+) True G2301600
TU2632930 lncRNA downstream 5442 16803620 ~ 16803877 (+) True G2301601
XM_021559974.2 mRNA upstream 10904 16785333 ~ 16786839 (+) False LOC110488019
XM_021559969.2 mRNA upstream 160854 16603599 ~ 16636889 (+) False LOC110488017
XM_021559970.2 mRNA upstream 160854 16603599 ~ 16636889 (+) False LOC110488017
XM_021559972.2 mRNA upstream 160854 16603599 ~ 16636889 (+) False LOC110488017
XM_021559971.2 mRNA upstream 160854 16603600 ~ 16636889 (+) False LOC110488017
XM_021559977.2 mRNA downstream 32530 16830708 ~ 16834652 (+) False LOC110488022
XM_021559976.2 mRNA downstream 32532 16830710 ~ 16834652 (+) False LOC110488022
XM_036971174.1 mRNA downstream 48556 16846734 ~ 16955570 (+) False calcr
XM_036971175.1 mRNA downstream 96951 16895129 ~ 16955570 (+) False calcr
XM_036971023.1 mRNA downstream 496165 17294343 ~ 17360159 (+) False LOC110488025
TU2632885 other upstream 9204 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 121072 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 158102 16636539 ~ 16639641 (+) True LOC110488017
TU2632763 other upstream 272349 16524510 ~ 16525394 (+) True G2301452
TU2631753 other upstream 545146 16203473 ~ 16252597 (+) True dss1
TU2632933 other downstream 28887 16827065 ~ 16834385 (+) True LOC110488022
TU2633200 other downstream 388387 17186565 ~ 17193117 (+) True G2301841
TU2635466 other downstream 1979167 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 2203164 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 2556033 19354211 ~ 19359789 (+) True dgat1a

Expression Profile