RNA id: TU2632927



Basic Information


Item Value
RNA id TU2632927
length 229
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G2301598
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16799363 ~ 16802406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atatagttgtttGTCAATTGTATTACAGAGGGTGGAGTACACAGAGGCTGTGATTAAGTTGCTGTGTGAGGAAGTtcatgTCCTATTTTTTCCCCTCTTTGTGTGAAACTAGTTTTAACTTGGAAGTGGGTGGATGATACAAATCAATGAGCATATACAGATATAACtgtctgtctatatgtgtgtgtgtttgtgtgtctatgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2632926 lncRNA upstream 84 16798763 ~ 16799279 (+) True G2301597
TU2632925 lncRNA upstream 1185 16797743 ~ 16798178 (+) True G2301596
TU2632886 lncRNA upstream 10824 16785368 ~ 16788539 (+) True LOC110488019
TU2632846 lncRNA upstream 105429 16669607 ~ 16693934 (+) False G2301522
TU2632928 lncRNA downstream 205 16802611 ~ 16802958 (+) True G2301599
TU2632929 lncRNA downstream 875 16803281 ~ 16803573 (+) True G2301600
TU2632930 lncRNA downstream 1214 16803620 ~ 16803877 (+) True G2301601
TU2632940 lncRNA downstream 4246 16806652 ~ 16806953 (+) True G2301610
TU2632941 lncRNA downstream 5256 16807662 ~ 16807862 (+) True G2301611
XM_021559974.2 mRNA upstream 12524 16785333 ~ 16786839 (+) False LOC110488019
XM_021559969.2 mRNA upstream 162474 16603599 ~ 16636889 (+) False LOC110488017
XM_021559977.2 mRNA downstream 28302 16830708 ~ 16834652 (+) False LOC110488022
XM_021559976.2 mRNA downstream 28304 16830710 ~ 16834652 (+) False LOC110488022
XM_036971174.1 mRNA downstream 44328 16846734 ~ 16955570 (+) False calcr
XM_036971175.1 mRNA downstream 92723 16895129 ~ 16955570 (+) False calcr
XM_036971023.1 mRNA downstream 491937 17294343 ~ 17360159 (+) False LOC110488025
TU2632885 other upstream 10824 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 122692 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 159722 16636539 ~ 16639641 (+) True LOC110488017
TU2632763 other upstream 273969 16524510 ~ 16525394 (+) True G2301452
TU2631753 other upstream 546766 16203473 ~ 16252597 (+) True dss1
TU2632933 other downstream 24659 16827065 ~ 16834385 (+) True LOC110488022
TU2633200 other downstream 384159 17186565 ~ 17193117 (+) True G2301841
TU2635466 other downstream 1974939 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 2198936 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 2551805 19354211 ~ 19359789 (+) True dgat1a

Expression Profile