RNA id: TU2633017



Basic Information


Item Value
RNA id TU2633017
length 695
lncRNA type intronic
GC content 0.36
exon number 2
gene id G2301682
representative False

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16901082 ~ 16902163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGGTAAAGTAGGTAAACATGTAGAGGTAAAGTaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtATGTAAAATATGTAGAGGTAAAGTaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtAGCTAAAGCATGTAGTGGTAAAGTaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtagataaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtagataaagcatgtagaggtaaagtaggtaaagcatgtagtggtaaagtaggtaaagcatgttgaggtaaagtaggtaaagcatgtagaggtaaagtAGGTAAAGCATGTAAGCATGTATATGTAAAGTaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaaaTTAGGTAAAGCATGTAAAGTaggtaaagcatgtagaggtaaagtaggtaaaacatgtagaggtaaagtaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtagctaaagcat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2633014 lncRNA upstream 12 16899049 ~ 16901070 (+) False G2301681
TU2633015 lncRNA upstream 791 16899618 ~ 16900291 (+) False G2301681
TU2632936 lncRNA upstream 64938 16835478 ~ 16836144 (+) True G2301606
TU2632960 lncRNA upstream 74295 16826444 ~ 16826787 (+) True G2301630
TU2632957 lncRNA upstream 76820 16824027 ~ 16824262 (+) True G2301627
TU2633042 lncRNA downstream 48129 16950057 ~ 16950275 (+) True G2301706
TU2632935 lncRNA downstream 51013 16952941 ~ 16953632 (+) False calcr
TU2632934 lncRNA downstream 52075 16954003 ~ 16955567 (+) True calcr
TU2633064 lncRNA downstream 72505 16974433 ~ 16979513 (+) True G2301716
TU2633076 lncRNA downstream 96373 16998301 ~ 17014938 (+) True G2301726
XM_021559977.2 mRNA upstream 66430 16830708 ~ 16834652 (+) False LOC110488022
XM_021559976.2 mRNA upstream 66430 16830710 ~ 16834652 (+) False LOC110488022
XM_021559974.2 mRNA upstream 114243 16785333 ~ 16786839 (+) False LOC110488019
XM_021559972.2 mRNA upstream 264193 16603599 ~ 16636889 (+) False LOC110488017
XM_036971023.1 mRNA downstream 392415 17294343 ~ 17360159 (+) False LOC110488025
XM_021559983.2 mRNA downstream 466840 17368768 ~ 17374337 (+) False fam133b
XM_021559982.2 mRNA downstream 466841 17368769 ~ 17374337 (+) True fam133b
XM_021559987.2 mRNA downstream 478241 17380169 ~ 17388113 (+) False LOC110488030
XM_021559986.2 mRNA downstream 478246 17380174 ~ 17388113 (+) False LOC110488030
TU2632933 other upstream 66697 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 112543 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 224411 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 261441 16636539 ~ 16639641 (+) True LOC110488017
TU2632763 other upstream 375688 16524510 ~ 16525394 (+) True G2301452
TU2633200 other downstream 284637 17186565 ~ 17193117 (+) True G2301841
TU2635466 other downstream 1875417 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 2099414 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 2452283 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 2926289 19828217 ~ 19829961 (+) True G2304678

Expression Profile