RNA id: TU2633064



Basic Information


Item Value
RNA id TU2633064
length 408
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G2301716
representative True

Chromosome Information


Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16974433 ~ 16979513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acacacagcggtatggacacacacagcagtatggacacacagcgGTATAGACACTCACAACAGTATGGACACACAGTGGTATGGACATACAGCGGTATAGACactcacagcagtatggacacacacagcagtatgaACACACAgcggtatggacacacacagcagtatggacacacagcagtatggacacacagcagtatggacacacagtggtatagacactcacagcagtatggacacacagcagtatggacacacacagtGGTATAGACATACACATCGGTATGgacacacagcagtatggacacacagcggtatggacacacacagtGGTATAGACATACACATCGGTATGgacacacagcagtatggacacacagcggtatggacacacacagtagtatagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2632934 lncRNA upstream 18866 16954003 ~ 16955567 (+) True calcr
TU2632935 lncRNA upstream 20801 16952941 ~ 16953632 (+) False calcr
TU2633042 lncRNA upstream 24158 16950057 ~ 16950275 (+) True G2301706
TU2633018 lncRNA upstream 72270 16901082 ~ 16902163 (+) True G2301682
TU2633017 lncRNA upstream 72505 16901082 ~ 16901928 (+) False G2301682
TU2633076 lncRNA downstream 18788 16998301 ~ 17014938 (+) True G2301726
TU2633108 lncRNA downstream 64400 17043913 ~ 17044839 (+) True G2301758
TU2633115 lncRNA downstream 70496 17050009 ~ 17051608 (+) True G2301764
TU2633124 lncRNA downstream 81577 17061090 ~ 17063174 (+) True G2301773
TU2633126 lncRNA downstream 82262 17061775 ~ 17062837 (+) True G2301774
XM_036971174.1 mRNA upstream 18863 16846734 ~ 16955570 (+) False calcr
XM_036971175.1 mRNA upstream 18863 16895129 ~ 16955570 (+) False calcr
XM_021559977.2 mRNA upstream 139781 16830708 ~ 16834652 (+) False LOC110488022
XM_021559976.2 mRNA upstream 139781 16830710 ~ 16834652 (+) False LOC110488022
XM_021559974.2 mRNA upstream 187594 16785333 ~ 16786839 (+) False LOC110488019
XM_036971023.1 mRNA downstream 314830 17294343 ~ 17360159 (+) False LOC110488025
XM_021559983.2 mRNA downstream 389255 17368768 ~ 17374337 (+) False fam133b
XM_021559982.2 mRNA downstream 389256 17368769 ~ 17374337 (+) True fam133b
XM_021559987.2 mRNA downstream 400656 17380169 ~ 17388113 (+) False LOC110488030
XM_021559986.2 mRNA downstream 400661 17380174 ~ 17388113 (+) False LOC110488030
TU2632933 other upstream 140048 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 185894 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 297762 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 334792 16636539 ~ 16639641 (+) True LOC110488017
TU2632763 other upstream 449039 16524510 ~ 16525394 (+) True G2301452
TU2633200 other downstream 207052 17186565 ~ 17193117 (+) True G2301841
TU2635466 other downstream 1797832 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 2021829 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 2374698 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 2848704 19828217 ~ 19829961 (+) True G2304678

Expression Profile