RNA id: TU2633938


Basic Information

Item Value
RNA id TU2633938
length 377
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G2302505
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17681444 ~ 17681820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGACTTGCTCCGTTGAgaacaggactgctttgctagcgctGATTAGAGACTCCGCCGATAACGTCAACGAGCTAACCACCTCTGTCACTGGCTTCATTCGGAAATGCATCAgtgacattgtccccacagtgaaggttCACTGCTTCCTCTAAAGCCTGGGATTAatcaccaaagcccaatatactacccaccattgcgacctgtatgctctcgttggctggtcctcacttcatattcgtcgccaaacccactggttccaggtcatctataagtctttgctaggtaaagccctgccttatctcagctcactggtcaccatagcagcacccacccgtagcacgtgctccagcaggtatatttcactggtcaccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2633894 lncRNA upstream 10122 17670251 ~ 17671322 (+) True G2302462
TU2633860 lncRNA upstream 104850 17576206 ~ 17576594 (+) True G2302430
TU2633853 lncRNA upstream 108831 17570951 ~ 17572613 (+) True G2302427
TU2633843 lncRNA upstream 144330 17535644 ~ 17537114 (+) True G2302417
TU2633712 lncRNA upstream 227418 17449663 ~ 17454026 (+) True G2302298
TU2633939 lncRNA downstream 544 17682364 ~ 17682933 (+) False G2302506
TU2633940 lncRNA downstream 544 17682364 ~ 17683057 (+) True G2302506
TU2633956 lncRNA downstream 14996 17696816 ~ 17699787 (+) True G2302520
TU2633957 lncRNA downstream 18502 17700322 ~ 17700544 (+) True G2302521
TU2633963 lncRNA downstream 20180 17702000 ~ 17702397 (+) True G2302526
XM_036970970.1 mRNA upstream 259932 17393355 ~ 17421512 (+) True pex1
XR_005041296.1 mRNA upstream 260450 17393354 ~ 17420994 (+) False pex1
XM_021559988.2 mRNA upstream 293331 17380174 ~ 17388113 (+) False LOC110488030
XM_021559992.2 mRNA downstream 22669 17704489 ~ 17713221 (+) True clcc1
XM_036971185.1 mRNA downstream 81186 17763006 ~ 17784596 (+) False LOC110488036
XM_036971184.1 mRNA downstream 81496 17763316 ~ 17784596 (+) False LOC110488036
XM_036971180.1 mRNA downstream 81741 17763561 ~ 17784596 (+) False LOC110488036
XR_005041323.1 mRNA downstream 81741 17763561 ~ 17784596 (+) False LOC110488036
TU2633200 other upstream 488327 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 847059 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 892905 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 1004773 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 1041803 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 1095525 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 1319522 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 1672391 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 2146397 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 2871513 20553333 ~ 20553684 (+) True G2305956

Expression Profile