RNA id: TU2633939


Basic Information

Item Value
RNA id TU2633939
length 570
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2302506
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17682364 ~ 17683057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgacccttgtattttatttttgcattgtCTCCATGCACACTGACACGTCGACACAGACAAACTTTCACTCCACCATTTGCTCACACACaatatgcacatacattcatACGGACTCTAAACACATGCACTCATATACAATCGTCAtgtatgctgctgctgctactctgttcatcatatatcctgatgcctagtcaccttacatatctacctccatcactccagtatccctacacattgtaaatattgtattggaactgaccctgtatatagcgtcttactttcttgtgttcttattttaatttattgtgtttttgttctaccttacgTTATTACTGCATTTTTGGGTTTAGATttggcaagaaaggcatttcagtgtacttgtgcatgtgacattaaaacttgaaacgtgagaggagacagacaacatTCTTCCTCTTATCTTCAGAGTGCTGCGCCCGCTTCAGGGGTATCAGTTCTTACAACCACGCATGTCTATGGGGGCCTGGTAGCGTCGCACGTACACAGCTTGTGGAGATCTTTTACACACTTATTTTATGCCAGGGCGAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2633938 lncRNA upstream 544 17681444 ~ 17681820 (+) True G2302505
TU2633894 lncRNA upstream 11042 17670251 ~ 17671322 (+) True G2302462
TU2633860 lncRNA upstream 105770 17576206 ~ 17576594 (+) True G2302430
TU2633853 lncRNA upstream 109751 17570951 ~ 17572613 (+) True G2302427
TU2633843 lncRNA upstream 145250 17535644 ~ 17537114 (+) True G2302417
TU2633956 lncRNA downstream 13883 17696816 ~ 17699787 (+) True G2302520
TU2633957 lncRNA downstream 17389 17700322 ~ 17700544 (+) True G2302521
TU2633963 lncRNA downstream 19067 17702000 ~ 17702397 (+) True G2302526
TU2633903 lncRNA downstream 34561 17717494 ~ 17719228 (+) False G2302470
TU2633902 lncRNA downstream 34670 17717603 ~ 17719228 (+) True G2302470
XM_036970970.1 mRNA upstream 260852 17393355 ~ 17421512 (+) True pex1
XR_005041296.1 mRNA upstream 261370 17393354 ~ 17420994 (+) False pex1
XM_021559988.2 mRNA upstream 294251 17380174 ~ 17388113 (+) False LOC110488030
XM_021559992.2 mRNA downstream 21556 17704489 ~ 17713221 (+) True clcc1
XM_036971185.1 mRNA downstream 80073 17763006 ~ 17784596 (+) False LOC110488036
XM_036971184.1 mRNA downstream 80383 17763316 ~ 17784596 (+) False LOC110488036
XM_036971180.1 mRNA downstream 80628 17763561 ~ 17784596 (+) False LOC110488036
XR_005041323.1 mRNA downstream 80628 17763561 ~ 17784596 (+) False LOC110488036
TU2633200 other upstream 489247 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 847979 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 893825 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 1005693 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 1042723 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 1094412 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 1318409 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 1671278 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 2145284 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 2870400 20553333 ~ 20553684 (+) True G2305956

Expression Profile