RNA id: TCONS_00059004


Basic Information

Item Value
RNA id TCONS_00059004
length 792
RNA type processed_transcript
GC content 0.50
exon number 4
gene id XLOC_030175
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30741730 ~ 30753167 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATAGCCCAGACTGATGCTGAGGAGCTGCCGTCTGTGACTGTGAACCCTTACTACTCCTTCGGCCCTGTTACCAAGGCTGTTTCTGAGATGAAGCAGCATCTAAATGAGTTCAGCAATGAAGAGCTGGTCAAAGTGGCAAAGACAGTTAACAAAATGCCTTTCTGCCAGCTGGAGGAACGCAAGAAGAAAAATGAGGAACGCAAAAAGAGTATGAAGGCTGATGATGTTGACATGTACAAGAGCCTCAGCAGTGCTCCCCGGACCAGAGACGAGTTCCTTCAGTATGCCTGCCAGCTTACTCTGGACCCCGACACGGCATACAGACAGATCTACATCTCCCGAAGCAACAGGAAAGCAGCACTGAAGAAAGATCCTCAATCTTACAGCGAAAGCAACCAGAGGTTTGACTGCCTGCCTCAGGTCTTGTGTAAGGAGTCTCTTTCAGGAGGTGCTTATTACTGGGAGGTGGAGTGGAGCGGTGAGGGAGCCTCTGTCGGTATCACCTATAAAGGCATCAAGAGGGCCGGTTATGGAGACTCTGCTCGAATCGGCTACAACCGCAAGTCCTGGAGCCTCTTCTGCTCTGACTCCAGCTACTCAGCCCGACACAACAAAGACCAGCTTGAGATTAAAGCGCCGTATTCTTCCCGTATCGGGGTCTTTCTGGACTGTGCAGGAGGCACTCTTTCTTTCTACACCGTGTCTGAGTCTATGTCACTAATTCATCAGTTTAAAGCCTCTTTCAGTGAGCCAGTGTATCCTGGCTTTTGGGTGTGGTACGAGTCTGCTG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031002-11 Predicted to enable zinc ion binding activity. Is expressed in several structures, including EVL; digestive system; ectoderm; hatching gland; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDART00000138292

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059000 lncRNA upstream 16198 30723983 ~ 30727648 (+) True XLOC_030174
TCONS_00061722 lncRNA upstream 19227 30723268 ~ 30724619 (+) False XLOC_030174
TCONS_00061719 lncRNA upstream 755415 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061718 lncRNA upstream 755415 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061717 lncRNA upstream 790930 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061723 lncRNA downstream 31389 30780430 ~ 30916825 (+) False XLOC_030177
TCONS_00061724 lncRNA downstream 31389 30780430 ~ 30921998 (+) False XLOC_030177
TCONS_00061725 lncRNA downstream 31389 30780430 ~ 30974079 (+) False XLOC_030177
TCONS_00061726 lncRNA downstream 31523 30780564 ~ 30828980 (+) False XLOC_030177
TCONS_00061727 lncRNA downstream 31546 30780587 ~ 30814570 (+) False XLOC_030177
TCONS_00058997 mRNA upstream 41955 30699260 ~ 30701891 (+) True XLOC_030173
TCONS_00058995 mRNA upstream 45938 30680804 ~ 30697908 (+) False XLOC_030172
TCONS_00058996 mRNA upstream 49586 30682737 ~ 30694260 (+) True XLOC_030172
TCONS_00058992 mRNA upstream 71364 30624183 ~ 30672482 (+) False XLOC_030171
TCONS_00059005 mRNA downstream 10191 30759232 ~ 30770807 (+) True XLOC_030176
TCONS_00059007 mRNA downstream 237471 30986512 ~ 30995108 (+) True XLOC_030179
TCONS_00059008 mRNA downstream 247281 30996322 ~ 31029436 (+) False XLOC_030180
TCONS_00059009 mRNA downstream 249723 30998764 ~ 31030833 (+) False XLOC_030180
TCONS_00059010 mRNA downstream 249723 30998764 ~ 31030840 (+) True XLOC_030180
TCONS_00058998 other upstream 16198 30723129 ~ 30727648 (+) False XLOC_030174
TCONS_00058999 other upstream 17229 30723910 ~ 30726617 (+) False XLOC_030174
TCONS_00058994 other upstream 73577 30669121 ~ 30670269 (+) True XLOC_030171
TCONS_00058990 other upstream 135308 30607838 ~ 30608538 (+) False XLOC_030170
TCONS_00058982 other upstream 334606 30392419 ~ 30409240 (+) True XLOC_030167
TCONS_00059006 other downstream 31559 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059020 other downstream 799271 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059030 other downstream 1111030 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059033 other downstream 1195566 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059050 other downstream 1429589 32178630 ~ 32182728 (+) True XLOC_030200

Expression Profile

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