RNA id: TU2633902


Basic Information

Item Value
RNA id TU2633902
length 1543
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G2302470
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17717494 ~ 17719228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttagttttgcccaacctaggtcgaggcacagacacggtctcaatggtgatagctgagctgactacactgactgtgctcgtggcagactccactatgctggcaggctggctaacagcctgctgcctggcctgcaccctatttcattgtggagctagaggagttagagccctgtctatgttggtagataagatgagagcacccctccagaaagagggccaattatctacaaattctatcttttgggaggggcagaaaacagttttcaaccagcgattgagttgtgagagaCTGCTGACTCCACAGAGAAACTGAaccatcgggggagaagggccttggtcagggacgtgaccaagaactcaatggtcactctgacatagcgctagagttcctctgtggagatgggagaaccttccagaaggacaaccatctctgcagcactccaccaaccaggcctttatggtagagtggccagacggaagccacttctgaataaaaggcacaggacagcccgcttggagtttgccagaaggcacctaaagactctcagaacatgaggactctgaccatgagaaacaagattctctgctctgatgaaaacCAAGATTACGGTATTGCCAGCCTAGAGTATTTGAAAATAACCTCTGATTCGCTATGCATTGATACTCCAAAATGTAAATTCTTAAACTGTGTGCTCATGTTGCGTGCCTGTTGTCATGATGTGCCCTGGAGGGAGGATCAtagccccctcccctctctctccaGTAAGACACATGGTAGAAACTGCCATGCAGTATTGAGGGAGAAAGTCTACCAGAAAAGAGCTTCTCTTAGTTTAAAACTCCTAATCCCAAAATGGGAGAACTAAACAATATTTctacttttgagaatgtgggaatggtctGTGGACAGTCATGTTGAGTGCGTTTCATTTGGTACGCGCGCATAGACATTACGTCGTCGTCATGGAACTGCCCTTTTCTACTCCAGAGTATAAAACCACCCGTGATGAAATGTACATTTCATGCCAAAGAGACCCACCTTAAGCCGGACGTCTCGAATGGTTAAGAAGTTAGAGAACGCCCAACGTTGGAATGGCTACAATTCTATAATAACATCGACCATATAAGAACATTtccgaatggtactctgaagtatccattctaaccacctaCAACCACGAAAGGCGTGACTTTTGGGAAAGTTAACCAGACACTTTGATGAACTCTACAGGACGATTGAgtattccaacagagaagacaacgtCATACGGGCATAAATATATACATAGCAATTATTCTTGAATGAGTGGCCTTAAATGTGCGAAGGATTAGCATTTCCATAATTATAATTATCCACTGTGTGTAGTGAATCCattttgtctttcccgctctCGCAGTCCacacccctttcctttgtctaccaagccgtcatatctgcTTGCCCCACTAAGGACTTTTCTATCactgttagtaaccaatatctactgtttgttttatcttattctgtgtgattatttggtgaataaataatttaaacaattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2633963 lncRNA upstream 15206 17702000 ~ 17702397 (+) True G2302526
TU2633957 lncRNA upstream 17059 17700322 ~ 17700544 (+) True G2302521
TU2633956 lncRNA upstream 17816 17696816 ~ 17699787 (+) True G2302520
TU2633940 lncRNA upstream 34546 17682364 ~ 17683057 (+) True G2302506
TU2633939 lncRNA upstream 34670 17682364 ~ 17682933 (+) False G2302506
TU2634072 lncRNA downstream 157729 17876957 ~ 17880270 (+) True G2302616
TU2634099 lncRNA downstream 200506 17919734 ~ 17920809 (+) False G2302641
TU2634102 lncRNA downstream 200506 17919734 ~ 17920809 (+) False G2302641
TU2634105 lncRNA downstream 200506 17919734 ~ 17920809 (+) False G2302641
TU2634107 lncRNA downstream 200506 17919734 ~ 17920809 (+) True G2302641
XM_021559992.2 mRNA upstream 4382 17704489 ~ 17713221 (+) True clcc1
XM_036970970.1 mRNA upstream 296091 17393355 ~ 17421512 (+) True pex1
XR_005041296.1 mRNA upstream 296609 17393354 ~ 17420994 (+) False pex1
XM_021559990.2 mRNA upstream 329490 17380178 ~ 17388113 (+) False LOC110488030
XM_036971185.1 mRNA downstream 43778 17763006 ~ 17784596 (+) False LOC110488036
XM_036971184.1 mRNA downstream 44088 17763316 ~ 17784596 (+) False LOC110488036
XM_036971180.1 mRNA downstream 44333 17763561 ~ 17784596 (+) False LOC110488036
XR_005041323.1 mRNA downstream 44333 17763561 ~ 17784596 (+) False LOC110488036
XM_036971182.1 mRNA downstream 45061 17764289 ~ 17784596 (+) False LOC110488036
TU2633200 other upstream 524486 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 883218 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 929064 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 1040932 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 1077962 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 1058117 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 1282114 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 1634983 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 2108989 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 2834105 20553333 ~ 20553684 (+) True G2305956

Expression Profile