RNA id: TU2634105


Basic Information

Item Value
RNA id TU2634105
length 453
lncRNA type intronic
GC content 0.37
exon number 3
gene id G2302641
representative False

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17919734 ~ 17920809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acactacactacactcaaccactaccctacactacactaaaccACCATACGCTAAGAAGAATAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGAACAGAAGACTAGTTACTAAACTGTTTTAGCTTTCTGAACAGAAGACTAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGAAATTAACTTGGGAGGTTAACTCAAGTTTTCAGGCAAGGATACTCGACCGTTGGCAATCTTTTTAGATTTTTTGGAGGATGGGATGCAGTTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2634072 lncRNA upstream 39464 17876957 ~ 17880270 (+) True G2302616
TU2633903 lncRNA upstream 200506 17717494 ~ 17719228 (+) False G2302470
TU2633902 lncRNA upstream 200506 17717603 ~ 17719228 (+) True G2302470
TU2633963 lncRNA upstream 217337 17702000 ~ 17702397 (+) True G2302526
TU2633957 lncRNA upstream 219190 17700322 ~ 17700544 (+) True G2302521
TU2634162 lncRNA downstream 72277 17993086 ~ 17993557 (+) True G2302696
TU2634235 lncRNA downstream 192036 18112845 ~ 18113057 (+) True G2302764
TU2634238 lncRNA downstream 194758 18115567 ~ 18115876 (+) True G2302767
TU2634240 lncRNA downstream 197011 18117820 ~ 18118048 (+) True G2302769
TU2634251 lncRNA downstream 212275 18133084 ~ 18133321 (+) True G2302780
XM_036971579.1 mRNA upstream 107380 17787777 ~ 17812354 (+) True LOC110488037
XM_036971180.1 mRNA upstream 135138 17763561 ~ 17784596 (+) False LOC110488036
XM_036970839.1 mRNA downstream 403708 18324517 ~ 18449153 (+) False ctnnal1
XM_036970840.1 mRNA downstream 403708 18324517 ~ 18449153 (+) False ctnnal1
XM_036970842.1 mRNA downstream 403708 18324517 ~ 18449153 (+) False ctnnal1
XM_036970843.1 mRNA downstream 403708 18324517 ~ 18449153 (+) True ctnnal1
XM_021560002.2 mRNA downstream 628144 18548953 ~ 18557288 (+) True LOC110488042
TU2633200 other upstream 726617 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 1085349 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 1131195 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 1243063 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 1280093 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 856536 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 1080533 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 1433402 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 1907408 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 2632524 20553333 ~ 20553684 (+) True G2305956