RNA id: TU2634273


Basic Information

Item Value
RNA id TU2634273
length 278
lncRNA type intronic
GC content 0.36
exon number 1
gene id G2302801
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18172269 ~ 18172546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGGTTGTAGATGTAGAGTATAGAATAGTACTGGGTTGTAGATGTAGAGTATAGAATAGTACTGGGTTGTAGATGTAGAGTATAGAATAGTGCTGGGTTGTAGATGTAGAGTATAGAATAGTACTGGGTTGTAGATGTAGAGTATATAACAGTGCTTGGTTGTAGATATAGAGTATTGTTGTTGAAGTACTGTAAATGAGGACTGTTCTGCCATctactatacatacagtatataattcAGCCCCTCCAGTATGTATAAACCTTACtgttttatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2634268 lncRNA upstream 3764 18168271 ~ 18168505 (+) True G2302797
TU2634253 lncRNA upstream 36780 18135267 ~ 18135489 (+) True G2302782
TU2634251 lncRNA upstream 38948 18133084 ~ 18133321 (+) True G2302780
TU2634240 lncRNA upstream 54221 18117820 ~ 18118048 (+) True G2302769
TU2634238 lncRNA upstream 56393 18115567 ~ 18115876 (+) True G2302767
TU2634276 lncRNA downstream 3766 18176312 ~ 18176582 (+) True G2302804
TU2634277 lncRNA downstream 5144 18177690 ~ 18177971 (+) True G2302805
TU2634279 lncRNA downstream 11230 18183776 ~ 18183990 (+) True G2302807
TU2634281 lncRNA downstream 15791 18188337 ~ 18188544 (+) True G2302809
TU2634284 lncRNA downstream 21861 18194407 ~ 18194615 (+) True G2302812
XM_036971579.1 mRNA upstream 359915 17787777 ~ 17812354 (+) True LOC110488037
XM_036971180.1 mRNA upstream 387673 17763561 ~ 17784596 (+) False LOC110488036
XM_036970839.1 mRNA downstream 151971 18324517 ~ 18449153 (+) False ctnnal1
XM_036970840.1 mRNA downstream 151971 18324517 ~ 18449153 (+) False ctnnal1
XM_036970842.1 mRNA downstream 151971 18324517 ~ 18449153 (+) False ctnnal1
XM_036970843.1 mRNA downstream 151971 18324517 ~ 18449153 (+) True ctnnal1
XM_021560002.2 mRNA downstream 376407 18548953 ~ 18557288 (+) True LOC110488042
TU2633200 other upstream 979152 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 1337884 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 1383730 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 1495598 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 1532628 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 604799 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 828796 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 1181665 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 1655671 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 2380787 20553333 ~ 20553684 (+) True G2305956

Expression Profile