RNA id: TU2634277


Basic Information

Item Value
RNA id TU2634277
length 282
lncRNA type intronic
GC content 0.41
exon number 1
gene id G2302805
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18177690 ~ 18177971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTACTACCATAccatgttcaaaggcacttcaatattttgtctttcccattcaccttctgaatggcacacagacaatccatgtctcaattgtctcagggCTTAAAGATCATTCTTTAACCAGTCACCTACCCTtctacactggttgaagtggatgtaacaagtgacatcaataagggatcatagctttcacctggatgcatctggtcagtctttgtcatggaaagagcaggtgttctgaTTGTAGAAGGCTTTTCCTCCATCATTTTTAATCTGCATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2634276 lncRNA upstream 1108 18176312 ~ 18176582 (+) True G2302804
TU2634273 lncRNA upstream 5144 18172269 ~ 18172546 (+) True G2302801
TU2634268 lncRNA upstream 9185 18168271 ~ 18168505 (+) True G2302797
TU2634253 lncRNA upstream 42201 18135267 ~ 18135489 (+) True G2302782
TU2634251 lncRNA upstream 44369 18133084 ~ 18133321 (+) True G2302780
TU2634279 lncRNA downstream 5805 18183776 ~ 18183990 (+) True G2302807
TU2634281 lncRNA downstream 10366 18188337 ~ 18188544 (+) True G2302809
TU2634284 lncRNA downstream 16436 18194407 ~ 18194615 (+) True G2302812
TU2634285 lncRNA downstream 17750 18195721 ~ 18195931 (+) True G2302813
TU2634329 lncRNA downstream 100201 18278172 ~ 18280543 (+) True G2302854
XM_036971579.1 mRNA upstream 365336 17787777 ~ 17812354 (+) True LOC110488037
XM_036971180.1 mRNA upstream 393094 17763561 ~ 17784596 (+) False LOC110488036
XM_036970839.1 mRNA downstream 146546 18324517 ~ 18449153 (+) False ctnnal1
XM_036970840.1 mRNA downstream 146546 18324517 ~ 18449153 (+) False ctnnal1
XM_036970842.1 mRNA downstream 146546 18324517 ~ 18449153 (+) False ctnnal1
XM_036970843.1 mRNA downstream 146546 18324517 ~ 18449153 (+) True ctnnal1
XM_021560002.2 mRNA downstream 370982 18548953 ~ 18557288 (+) True LOC110488042
TU2633200 other upstream 984573 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 1343305 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 1389151 16785368 ~ 16788539 (+) False LOC110488019
TU2632840 other upstream 1501019 16669607 ~ 16676671 (+) False G2301522
TU2632809 other upstream 1538049 16636539 ~ 16639641 (+) True LOC110488017
TU2635466 other downstream 599374 18777345 ~ 18783027 (+) True G2303854
TU2635622 other downstream 823371 19001342 ~ 19015593 (+) False LOC110488049
TU2636184 other downstream 1176240 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 1650246 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 2375362 20553333 ~ 20553684 (+) True G2305956

Expression Profile