RNA id: TU2636016


Basic Information

Item Value
RNA id TU2636016
length 295
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2304285
representative True

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19055773 ~ 19056067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttagtattgtggagttacgataatgttgttgatccatccccagttttcttctatcacagccattaaactctgtaactgttttaaagtcaccattcgtctcatggtgaaatccatgagtggtttccttcctctctggcaactgagttatgaaggacacctgtatctttgtagtgactgggtgtattgatacactatccaaagtgtaattaataacttcaacaggctcaaagggatattcaatgtttgcttcttcttcttttttttacccatcagccaatagatgcccttctttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2635656 lncRNA upstream 574 19054997 ~ 19055199 (+) True G2303995
TU2635614 lncRNA upstream 12307 19041419 ~ 19043466 (+) True G2303957
TU2635651 lncRNA upstream 26128 19029297 ~ 19029645 (+) True G2303990
TU2635627 lncRNA upstream 37346 19018089 ~ 19018427 (+) True G2303967
TU2635628 lncRNA upstream 38287 19016886 ~ 19017486 (+) True G2303968
TU2636017 lncRNA downstream 4 19056071 ~ 19056281 (+) True G2304286
TU2636062 lncRNA downstream 75938 19132005 ~ 19146170 (+) True G2304326
TU2636071 lncRNA downstream 88989 19145056 ~ 19148210 (+) True G2304335
TU2636138 lncRNA downstream 217920 19273987 ~ 19276865 (+) True G2304399
TU2636175 lncRNA downstream 279151 19335218 ~ 19344815 (+) True G2304434
XM_021560021.2 mRNA upstream 14652 19022375 ~ 19041121 (+) False LOC110488050
XM_021560020.2 mRNA upstream 14652 19022383 ~ 19041121 (+) False LOC110488050
XM_021560022.2 mRNA upstream 14652 19023008 ~ 19041121 (+) True LOC110488050
XM_036971186.1 mRNA upstream 39359 18998633 ~ 19016414 (+) False LOC110488049
XM_021560023.2 mRNA downstream 63884 19119951 ~ 19124074 (+) True scrt1a
XM_036970734.1 mRNA downstream 298111 19354178 ~ 19379095 (+) False dgat1a
XM_021560026.2 mRNA downstream 298112 19354179 ~ 19379095 (+) False dgat1a
XM_036971445.1 mRNA downstream 328517 19384584 ~ 19429517 (+) True trpn1
XM_021560030.2 mRNA downstream 411763 19467830 ~ 19539008 (+) False LOC110488054
TU2635622 other upstream 40180 19001342 ~ 19015593 (+) False LOC110488049
TU2635466 other upstream 272746 18777345 ~ 18783027 (+) True G2303854
TU2633200 other upstream 1862656 17186565 ~ 17193117 (+) True G2301841
TU2632933 other upstream 2221388 16827065 ~ 16834385 (+) True LOC110488022
TU2632885 other upstream 2267234 16785368 ~ 16788539 (+) False LOC110488019
TU2636184 other downstream 298144 19354211 ~ 19359789 (+) True dgat1a
TU2636452 other downstream 772150 19828217 ~ 19829961 (+) True G2304678
TU2637856 other downstream 1497266 20553333 ~ 20553684 (+) True G2305956
TU2638086 other downstream 1757122 20813189 ~ 20814189 (+) False G2306173
TU2638087 other downstream 1757122 20813189 ~ 20814298 (+) True G2306173

Expression Profile